Detailed information    

insolico Bioinformatically predicted

Overview


Name   dsbA2   Type   Machinery gene
Locus tag   FAH66_RS08290 Genome accession   NZ_CP039887
Coordinates   1707635..1708330 (-) Length   231 a.a.
NCBI ID   WP_137041287.1    Uniprot ID   -
Organism   Neisseria subflava strain ATCC 49275     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1702635..1713330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH66_RS08280 (FAH66_08280) ccsA 1705104..1705916 (-) 813 WP_070461213.1 cytochrome c biogenesis protein CcsA -
  FAH66_RS08285 (FAH66_08285) ffh 1706099..1707469 (+) 1371 WP_003684000.1 signal recognition particle protein -
  FAH66_RS08290 (FAH66_08290) dsbA2 1707635..1708330 (-) 696 WP_137041287.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  FAH66_RS08295 (FAH66_08295) - 1708501..1710611 (-) 2111 Protein_1568 TonB-dependent receptor -
  FAH66_RS08300 (FAH66_08300) - 1710771..1711304 (-) 534 WP_137041288.1 alpha/beta hydrolase -
  FAH66_RS08305 (FAH66_08305) - 1711315..1711659 (-) 345 WP_070748538.1 hypothetical protein -
  FAH66_RS08310 (FAH66_08310) - 1711646..1712425 (-) 780 WP_137041289.1 exodeoxyribonuclease III -

Sequence


Protein


Download         Length: 231 a.a.        Molecular weight: 25338.79 Da        Isoelectric Point: 5.3625

>NTDB_id=360953 FAH66_RS08290 WP_137041287.1 1707635..1708330(-) (dsbA2) [Neisseria subflava strain ATCC 49275]
MRLKTLALTSLTLLALAACGKQAETSVPADSAQSSASAPAAPAPLTEGVNYTVLSTPIPQQQAGKVEVLEFFGYFCPHCA
HLEPVLSEHTKTFKDDTYLRREHVIWGDEMKPLARLAAAVEIAGESDKANSHIFDAMVNQKINLADTDTLKKWLSEQTAF
DGKKVLAAFEAPESQARAAQMEELTNKFQISGTPTVIVGSKYQVEFKDWQSGMTTIDQLVDKVREEQKKPQ

Nucleotide


Download         Length: 696 bp        

>NTDB_id=360953 FAH66_RS08290 WP_137041287.1 1707635..1708330(-) (dsbA2) [Neisseria subflava strain ATCC 49275]
ATGAGACTGAAAACCTTAGCTTTGACTTCATTGACCCTGTTGGCATTGGCCGCTTGCGGCAAACAGGCTGAAACCAGCGT
TCCGGCAGACAGCGCCCAAAGCAGCGCATCTGCTCCGGCAGCGCCAGCTCCATTGACCGAAGGCGTGAACTACACTGTAT
TGTCTACGCCTATTCCACAACAACAGGCCGGCAAAGTCGAAGTATTGGAATTTTTCGGCTACTTCTGCCCGCATTGCGCC
CATTTGGAGCCGGTTTTGAGCGAACACACCAAAACGTTCAAAGACGATACCTACCTGCGTCGCGAGCATGTGATTTGGGG
TGACGAAATGAAACCTTTGGCTCGTTTGGCCGCCGCAGTGGAAATAGCCGGCGAATCAGATAAAGCGAACAGCCATATTT
TCGATGCGATGGTTAATCAAAAAATCAATCTAGCCGATACCGATACCCTGAAAAAATGGTTGTCCGAGCAAACTGCATTT
GACGGCAAAAAAGTATTGGCTGCATTTGAAGCGCCCGAAAGTCAAGCGCGTGCGGCTCAAATGGAAGAGTTGACCAATAA
ATTCCAAATCAGCGGCACACCGACCGTTATCGTCGGCAGCAAATACCAAGTCGAATTTAAAGACTGGCAGTCCGGCATGA
CCACGATTGACCAGTTGGTGGACAAAGTACGCGAAGAGCAGAAAAAGCCGCAATAA

Domains


Predicted by InterproScan.

(64-211)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA2 Neisseria meningitidis MC58

95.305

92.208

0.879

  dsbA1 Neisseria meningitidis MC58

69.957

100

0.706


Multiple sequence alignment