Detailed information NTG0360941

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GVI77_RS05445
• Genome accession: NZ_CP047710
• Coordinates: 1153116..1154108 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Eco-15
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1148116..1159108

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GVI77_RS05415 (GVI77_05425)	ispD	1148177..1148887 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GVI77_RS05420 (GVI77_05430)	ispF	1148887..1149366 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GVI77_RS05425 (GVI77_05435)	truD	1149363..1150412 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
GVI77_RS05430 (GVI77_05440)	surE	1150393..1151154 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GVI77_RS05435 (GVI77_05445)	pcm	1151148..1151774 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GVI77_RS05440 (GVI77_05450)	nlpD	1151959..1153053 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
GVI77_RS05445 (GVI77_05455)	rpoS	1153116..1154108 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GVI77_RS05450 (GVI77_05460)	-	1154279..1154830 (-)	552	WP_001179444.1	flavodoxin family protein	-
GVI77_RS05455 (GVI77_05465)	-	1155055..1156098 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
GVI77_RS05460 (GVI77_05470)	ygbN	1156241..1157605 (-)	1365	WP_000104433.1	GntP family transporter	-
GVI77_RS05465 (GVI77_05475)	ygbM	1157694..1158470 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=360941 GVI77_RS05445 WP_000081550.1 1153116..1154108(+) (rpoS) [Escherichia coli strain Eco-15]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=360941 GVI77_RS05445 WP_000081550.1 1153116..1154108(+) (rpoS) [Escherichia coli strain Eco-15]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715