Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   FAH66_RS05355 Genome accession   NZ_CP039887
Coordinates   1087013..1090669 (+) Length   1218 a.a.
NCBI ID   WP_137040929.1    Uniprot ID   -
Organism   Neisseria subflava strain ATCC 49275     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1082013..1095669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH66_RS05325 (FAH66_05325) - 1082677..1083564 (-) 888 WP_244285033.1 hypothetical protein -
  FAH66_RS05330 (FAH66_05330) terL 1083561..1084913 (-) 1353 WP_244285035.1 phage terminase large subunit -
  FAH66_RS05335 (FAH66_05335) - 1085072..1085254 (+) 183 WP_137040926.1 hypothetical protein -
  FAH66_RS11165 - 1085257..1085565 (+) 309 WP_308186868.1 hypothetical protein -
  FAH66_RS11170 - 1085593..1085733 (+) 141 WP_308862626.1 hypothetical protein -
  FAH66_RS05345 (FAH66_05345) - 1085767..1085967 (+) 201 WP_137040927.1 hypothetical protein -
  FAH66_RS05350 (FAH66_05350) - 1086098..1086868 (+) 771 WP_137040928.1 hemagglutinin repeat-containing protein -
  FAH66_RS05355 (FAH66_05355) recB 1087013..1090669 (+) 3657 WP_137040929.1 exodeoxyribonuclease V subunit beta Machinery gene
  FAH66_RS05360 (FAH66_05360) dinB 1090807..1091865 (-) 1059 WP_137040930.1 DNA polymerase IV -
  FAH66_RS05365 (FAH66_05365) - 1091943..1092992 (-) 1050 WP_208648095.1 sulfate ABC transporter substrate-binding protein -
  FAH66_RS05370 (FAH66_05370) - 1093380..1094216 (+) 837 WP_137040932.1 DUF4198 domain-containing protein -
  FAH66_RS05375 (FAH66_05375) - 1094261..1095112 (-) 852 WP_137040933.1 DUF5672 family protein -

Sequence

Protein


Download         Length: 1218 a.a.        Molecular weight: 137981.21 Da        Isoelectric Point: 5.7455

>NTDB_id=360941 FAH66_RS05355 WP_137040929.1 1087013..1090669(+) (recB) [Neisseria subflava strain ATCC 49275]
MSSALPFDALTLSINGTNLIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLNE
IQTLGGKPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKATLSQFDNASIYTIHGFCQRVLRDY
AFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDTTLAQLVFDRKCTPEEMLAEIKSYTGRPYLKFRRPEGSLKEAQAN
LQETWQKVCGQLEDLEKVFWTILPKLNGQTYKRNTFENVFIDLKTNAESSHLPRLSKQTLGKLSLFSIDTLNSKLKKEYK
ADADAPEIIQLQALANLGRDLQAMESAEEAVFICLQLDLLSYINQSIAEQKKSRRERVFDDLLLDVHQALTIHEHGNALA
KVATANWEIALIDEFQDTDPLQYEIFRQIFIEQGCPLFLVGDPKQAIYSFRGADIYAYLQAAQDADRHYTLAVNYRSHAK
LINGISALFKQKKHPFVLENIDYSDVSASRAKSRLSPHRPAIQVRWLNTDDQTGKEILRGRAAEYCADEIAFALNEAAEG
RLNFKGRALESGDIAVLVRTNNEAAMIAGKLKQRRIQSVLLSRQSVFDSAEADSLSALIGFWLNPRQTDWLRFVLTGVLF
GYTAKEIYELNHNEHQLLKWLESSAEAMEKWRKGGIFAAVQQFAALHDIETRLLKGGNERSLTNYYQILELLAEEDSQSR
NPAALHKWLNEQIGRARGGHFPSDAQTIRLESDEKLVKIVTIHASKGLQYPLVYCPFAWDTKDNSKENWKILHTENHETE
LLATSQTSEAELSHLADEKTAEDLRLLYVALTRAEEQLNIYAAANKNCTPNNPFAYLLEGLPDAGRESVSQSYKSATDVV
EMLKTNWQRFIKNAPENTEFAFTEEAPPETVYQYSRQQDQAFGAHSIKRRDFDFIRHTSFTGLSRHTKSTDEQHEPLQPA
IDPAESADRAMPSENLPSPLSDGLDIHHFPRGTNAGVCLHEMLEKLDFAASAESQSEMIAEVLQRHSFEDKWLPTVSAML
DTCRLTPLIGESLSQIPPTRRLPEMGFTLYMDDFKLDDLRHWFASSEANLPPECVQAAQLLDFHDLQGYLNGFIDMVCQD
SDGNVVLIDYKSNHLGNDASAYTQQAMNEAVAHHHYYLQALIYAVAIARYYALRGKPLTKIAIRYLFLRGMDGSERGIWK
WDIDTALLSTFVERKTNS

Nucleotide


Download         Length: 3657 bp        

>NTDB_id=360941 FAH66_RS05355 WP_137040929.1 1087013..1090669(+) (recB) [Neisseria subflava strain ATCC 49275]
ATGTCTTCCGCCCTTCCTTTTGACGCGCTCACACTTTCCATCAACGGCACCAACCTCATCGAAGCTTCTGCCGGTACGGG
TAAAACCTACGGCATTGCCGCGCTCTTTACCCGACTGATTGTTTTAGAAAAAAAAGACATCGAGAAAATTCTGGTCGTTA
CCTTTACCAAGGCGGCGACGGCAGAACTGAAAACCCGTTTGCGCGCGCGTTTGGACGAAGTATTGCAGGTTTTGAACGAA
ATCCAAACTTTGGGCGGCAAGCCGGAACATATTTCAGACGGCCTGAACAAATATTACGAAAAAGAGAAAAAATCCCCCGA
TGACTTTCTCAATCGCTTGATTCCTTTGGCTTTAGGTGAGCAAGACGGACAGGAAAGCTGCCATCGCCTGATTCTCCGCC
TCAAAGCCACGCTGAGCCAGTTTGACAACGCCTCGATTTACACTATCCACGGCTTCTGTCAGCGCGTTTTGCGCGATTAT
GCGTTTTTGTGCGGCGCGCCTTTGGATGTCGAGCTGTCGGACGACTCGCGCGAGAGGCTGCTGATTCCTGCGCAGGACTT
TTGGCGGCAGAAAGTGGCAACCGATACCACATTGGCACAATTGGTTTTTGACCGGAAATGCACGCCTGAAGAAATGCTTG
CCGAAATCAAAAGCTACACCGGCCGCCCCTATCTGAAATTCAGACGGCCTGAAGGCAGTTTGAAAGAAGCCCAAGCCAAC
CTTCAAGAAACATGGCAAAAAGTTTGCGGTCAGTTGGAAGACTTGGAAAAAGTGTTTTGGACAATCTTGCCCAAACTTAA
TGGCCAGACCTACAAAAGAAATACCTTTGAAAATGTTTTTATCGATTTAAAAACAAACGCCGAATCCAGTCATCTGCCCC
GCCTGAGCAAACAAACGCTAGGGAAATTAAGCCTCTTCAGTATCGACACGCTCAACAGCAAACTGAAAAAAGAATATAAA
GCCGATGCCGATGCGCCGGAAATTATCCAGCTGCAAGCCTTGGCCAATCTCGGTCGTGATTTGCAAGCAATGGAAAGCGC
GGAAGAAGCGGTCTTCATCTGCCTGCAACTCGATCTCCTTTCCTACATCAACCAATCTATTGCCGAACAAAAAAAATCAC
GCCGCGAGCGCGTGTTTGACGATTTGCTGCTGGATGTCCATCAGGCATTGACCATCCATGAACACGGCAACGCATTGGCA
AAAGTGGCGACGGCAAACTGGGAAATCGCGCTGATTGACGAATTCCAAGATACCGACCCGCTGCAATATGAAATTTTCCG
CCAAATTTTTATCGAACAAGGCTGCCCGCTGTTTCTCGTTGGCGACCCCAAACAGGCGATTTACAGCTTTCGCGGTGCGG
ACATTTACGCCTATCTGCAAGCCGCGCAAGATGCGGACAGGCATTACACCCTCGCCGTCAACTACCGCAGCCATGCCAAG
CTGATCAACGGCATCAGCGCCTTGTTCAAACAAAAAAAACATCCATTCGTATTGGAAAACATCGATTACAGCGATGTCTC
CGCCAGCCGTGCCAAAAGCCGGCTGTCGCCACACCGCCCCGCCATCCAAGTGCGCTGGCTCAATACGGACGACCAAACCG
GCAAAGAAATTTTGCGCGGCCGTGCCGCCGAATATTGCGCCGATGAAATTGCCTTTGCGCTCAATGAAGCAGCCGAAGGC
CGTCTGAACTTCAAAGGCCGTGCATTGGAATCCGGCGATATTGCCGTCTTGGTACGCACCAACAACGAAGCGGCGATGAT
TGCCGGTAAACTGAAACAGCGCCGTATCCAAAGCGTGTTGCTGTCGCGCCAGTCCGTTTTCGATTCCGCCGAGGCAGACT
CGCTGTCCGCGCTGATCGGCTTTTGGCTCAACCCAAGGCAAACCGACTGGCTGCGCTTTGTCTTAACTGGCGTTTTATTC
GGCTATACCGCCAAAGAGATTTACGAACTCAACCACAACGAACACCAGCTACTGAAATGGCTGGAATCGTCTGCCGAAGC
CATGGAAAAATGGCGTAAAGGCGGCATTTTTGCCGCCGTGCAGCAGTTTGCCGCCCTACATGACATCGAAACACGCCTGC
TCAAAGGCGGCAACGAACGCAGCCTGACCAACTACTACCAAATTCTGGAGCTTTTGGCCGAAGAAGACAGCCAAAGCCGC
AACCCTGCCGCCCTGCATAAATGGCTGAACGAACAAATCGGCCGTGCGCGCGGCGGCCATTTCCCGTCAGACGCGCAAAC
CATCCGTCTTGAAAGCGACGAAAAACTGGTCAAAATCGTTACCATACACGCGTCGAAAGGTTTGCAATATCCTTTGGTGT
ACTGCCCCTTTGCATGGGATACCAAAGACAATTCCAAAGAAAACTGGAAAATCCTGCATACAGAAAACCACGAAACCGAG
CTGCTGGCAACATCGCAAACCTCGGAAGCAGAACTAAGCCACCTTGCCGACGAAAAGACGGCAGAAGATTTGCGCCTGCT
CTATGTCGCCCTTACCCGCGCCGAAGAACAGCTCAACATCTACGCCGCCGCCAACAAAAACTGTACGCCAAACAATCCTT
TTGCCTATCTGCTCGAAGGTTTGCCGGATGCCGGCCGCGAAAGCGTCAGTCAAAGCTATAAAAGCGCGACAGATGTTGTG
GAAATGCTCAAAACCAACTGGCAGCGCTTTATCAAAAACGCGCCTGAAAATACGGAGTTTGCCTTCACGGAAGAAGCCCC
GCCGGAAACCGTCTACCAATACAGCCGCCAGCAAGACCAAGCTTTTGGCGCACATAGCATCAAACGCCGCGATTTTGACT
TTATCCGCCACACCAGCTTTACCGGTTTGAGCAGACACACCAAGTCAACCGACGAACAACACGAGCCTTTGCAACCTGCC
ATCGACCCGGCAGAAAGCGCAGACCGTGCCATGCCGTCTGAAAACCTGCCGTCCCCGCTTTCAGACGGCCTCGATATCCA
TCATTTCCCCCGCGGCACCAATGCCGGCGTATGTTTGCATGAAATGTTGGAAAAACTCGACTTCGCCGCCTCTGCCGAGA
GCCAATCCGAAATGATTGCCGAAGTTTTGCAACGCCACAGCTTTGAAGACAAATGGCTGCCGACGGTAAGCGCCATGCTC
GACACCTGCCGCCTGACGCCTTTAATCGGCGAGAGCCTGTCGCAGATTCCGCCAACCCGACGCCTGCCCGAAATGGGGTT
CACCCTGTACATGGACGATTTCAAACTGGACGACTTGCGCCATTGGTTTGCCTCAAGCGAAGCAAACCTGCCGCCCGAAT
GCGTCCAAGCCGCGCAACTGCTTGATTTCCATGATTTGCAAGGCTATTTAAACGGCTTTATCGATATGGTTTGCCAAGAT
TCAGACGGCAATGTCGTTTTAATCGACTACAAATCCAACCATTTGGGCAACGATGCAAGCGCCTACACGCAACAGGCGAT
GAACGAAGCCGTGGCGCATCATCACTACTACCTGCAAGCCCTGATCTACGCCGTTGCCATTGCGCGCTACTACGCCCTGC
GCGGCAAGCCGTTGACCAAAATCGCCATCCGCTACCTCTTCCTACGCGGCATGGACGGCTCGGAACGAGGCATTTGGAAA
TGGGACATCGATACCGCCCTGCTTTCCACTTTTGTTGAACGAAAAACAAATTCTTGA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(12-465)

UvrD-like helicase C-terminal domain (UvrD_C)

(469-842)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(995-1189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

60.315

99.097

0.598

Multiple sequence alignment