Detailed information NTG0360891

Bioinformatically predicted

Overview

• Name: recD
• Type: Machinery gene
• Locus tag: FAH67_RS04535
• Genome accession: NZ_CP039886
• Coordinates: 879693..881456 (-)
• Length: 587 a.a.
• NCBI ID: WP_003679084.1
• Uniprot ID: -
• Organism: Neisseria flavescens strain ATCC 13120
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	863124..881456	879693..881456	within	0

Gene organization within MGE regions

Location: 863124..881456

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FAH67_RS11505	-	863124..864461 (-)	1338	WP_003679125.1	DDE-type integrase/transposase/recombinase	-
FAH67_RS04445 (FAH67_04445)	-	864458..865105 (-)	648	WP_003679124.1	heteromeric transposase endonuclease subunit TnsA	-
FAH67_RS04450 (FAH67_04450)	hemB	865571..866572 (-)	1002	WP_039863499.1	porphobilinogen synthase	-
FAH67_RS04455 (FAH67_04455)	-	866605..867315 (-)	711	WP_003679122.1	hypothetical protein	-
FAH67_RS04460 (FAH67_04460)	-	867476..868348 (-)	873	WP_112890791.1	DMT family transporter	-
FAH67_RS04465 (FAH67_04465)	-	868352..868939 (-)	588	WP_003679117.1	DnaJ domain-containing protein	-
FAH67_RS04470 (FAH67_04470)	ybaK	868955..869440 (-)	486	WP_003679115.1	Cys-tRNA(Pro) deacylase	-
FAH67_RS04475 (FAH67_04475)	-	869539..869892 (+)	354	WP_003679113.1	RidA family protein	-
FAH67_RS04480 (FAH67_04480)	ttcA	870021..870980 (+)	960	WP_003679109.1	tRNA 2-thiocytidine(32) synthetase TtcA	-
FAH67_RS04485 (FAH67_04485)	-	871140..871628 (+)	489	WP_003679107.1	DUF456 family protein	-
FAH67_RS04490 (FAH67_04490)	-	871690..872349 (-)	660	WP_003679105.1	YecA family protein	-
FAH67_RS04495 (FAH67_04495)	-	872384..873175 (-)	792	WP_003679103.1	RNA methyltransferase	-
FAH67_RS04500 (FAH67_04500)	-	873294..873842 (-)	549	WP_039863498.1	sigma-E factor negative regulatory protein	-
FAH67_RS04505 (FAH67_04505)	rpoE	873848..874447 (-)	600	WP_003679099.1	RNA polymerase sigma factor RpoE	-
FAH67_RS04510 (FAH67_04510)	-	874604..874963 (-)	360	WP_003679097.1	hypothetical protein	-
FAH67_RS04515 (FAH67_04515)	tilS	875320..876645 (-)	1326	WP_003679093.1	tRNA lysidine(34) synthetase TilS	-
FAH67_RS04520 (FAH67_04520)	-	876735..877694 (-)	960	WP_003679092.1	acetyl-CoA carboxylase carboxyltransferase subunit alpha	-
FAH67_RS04525 (FAH67_04525)	-	877901..878302 (+)	402	WP_003679090.1	RNA-binding S4 domain-containing protein	-
FAH67_RS04530 (FAH67_04530)	-	878397..879596 (-)	1200	WP_003679086.1	hypothetical protein	-
FAH67_RS04535 (FAH67_04535)	recD	879693..881456 (-)	1764	WP_003679084.1	exodeoxyribonuclease V subunit alpha	Machinery gene

Sequence

Protein

• Length: 587 a.a.
• Molecular weight: 64758.93 Da
• Isoelectric Point: 5.4159

>NTDB_id=360891 FAH67_RS04535 WP_003679084.1 879693..881456(-) (recD) [Neisseria flavescens strain ATCC 13120]
MNPTDSILSSAADAAIAFFRRHEVQGVSVIEPYVVRLFAALQNGHSFIYLDKEDVDALSNLPNLVGNADKPLILQGRKLF
LGRMWQLEHDLAVEIKRLASAEAEEVNFMAASKSLSDWFDPKDSKEQRDAAALALLQNFMLITGGPGTGKTTTVAKLLGL
ICNNSTKLPRIALAAPTGKAAAHMARALQRALDGFDLSPSIKAHLENLEGQTVHRLLKLRPPQMRPAFNREYPLALDVLV
VDEASMLDLPLVLDLLRAVPTGCRLVLLGDENQLPSVGLGAVLAALSRPTALDKETAEKLEVYLPNHGFEIKGQPQALSQ
NNAKLTFSHRFGADSGIGCLARAVVSGEKQTAVEQFDKFPKELEMKSGRLKEQVALLYQKQQNYWQAVAENNVALAYGHA
ADVVVLAAWRQDADDLNQAYQEYLQRQGKVSGETPWFAGQIIMITHNDYMLEVFNGDIGLIMKDEESLNGLSAYFPEKDG
FKKIAISRLPDFESAFAMTVHKSQGSEYREVWLLPPSVPATTEGEEEARGLDKALLYTAITRARECFVFWGNAEELCQAV
GCHQKRRTALADALKWQFEQSDEQASV

Nucleotide

• Length: 1764 bp

>NTDB_id=360891 FAH67_RS04535 WP_003679084.1 879693..881456(-) (recD) [Neisseria flavescens strain ATCC 13120]
ATGAATCCGACCGACTCTATCCTTTCCTCTGCCGCAGATGCGGCCATAGCGTTTTTCCGCCGCCACGAAGTACAGGGGGT
ATCCGTTATTGAGCCTTATGTGGTTCGGCTGTTTGCAGCCTTGCAAAACGGGCATTCGTTTATTTACTTGGATAAAGAGG
ATGTCGATGCCTTAAGCAACTTGCCGAACTTGGTCGGTAATGCGGATAAACCGCTTATCCTGCAAGGCCGGAAATTGTTT
TTGGGGCGGATGTGGCAGTTGGAGCATGATTTGGCTGTTGAAATCAAACGGCTGGCCAGTGCAGAGGCGGAAGAAGTGAA
TTTCATGGCGGCTTCAAAAAGCCTGAGCGACTGGTTTGACCCTAAAGACAGTAAAGAGCAACGGGATGCTGCGGCTTTGG
CTTTGCTGCAAAACTTTATGCTGATTACCGGTGGGCCGGGTACGGGTAAGACGACGACCGTAGCAAAGCTTTTGGGTCTG
ATTTGCAATAACAGTACGAAGCTGCCCCGTATCGCGTTGGCAGCGCCGACGGGCAAAGCGGCTGCGCATATGGCACGGGC
TTTGCAGCGTGCTTTGGACGGTTTTGATTTGTCTCCGAGCATTAAAGCGCATTTGGAAAACTTGGAAGGGCAGACCGTCC
ATCGATTGTTGAAACTGAGGCCGCCGCAAATGCGCCCTGCGTTCAATCGTGAATATCCACTTGCTTTGGATGTTTTGGTG
GTGGATGAGGCTTCGATGTTGGATTTGCCGCTGGTGTTGGATTTGTTGCGTGCCGTACCGACCGGCTGTCGTCTGGTGTT
GCTTGGCGATGAAAACCAGTTGCCGTCGGTTGGTCTGGGAGCCGTATTGGCGGCATTGTCGCGTCCGACAGCTTTGGATA
AAGAAACCGCTGAAAAGCTGGAGGTGTATCTGCCCAATCATGGCTTTGAGATTAAAGGGCAGCCACAGGCTTTATCGCAA
AACAATGCCAAATTGACGTTCAGTCACCGTTTTGGCGCAGACAGCGGTATCGGTTGTTTGGCAAGGGCGGTGGTGTCCGG
GGAAAAGCAAACTGCGGTCGAACAGTTTGACAAGTTTCCCAAAGAGTTGGAAATGAAATCAGGCCGTCTGAAAGAGCAGG
TCGCCTTGCTGTATCAAAAGCAACAGAATTATTGGCAGGCCGTGGCAGAGAATAATGTCGCACTCGCTTACGGTCATGCG
GCCGATGTGGTGGTATTGGCGGCTTGGCGGCAGGATGCGGATGATTTGAATCAGGCTTATCAAGAATATCTGCAACGACA
AGGCAAGGTTTCGGGCGAAACGCCTTGGTTTGCCGGACAAATCATCATGATTACCCACAATGATTACATGCTGGAAGTGT
TTAACGGCGACATCGGGCTGATTATGAAAGATGAAGAATCGTTGAATGGCTTGTCTGCCTATTTCCCTGAGAAAGATGGA
TTCAAAAAAATTGCCATCAGCCGTTTGCCTGATTTTGAATCGGCTTTTGCCATGACGGTGCATAAGAGCCAAGGTTCGGA
ATATCGGGAAGTATGGCTGTTGCCGCCGTCAGTGCCTGCAACGACGGAGGGCGAAGAGGAAGCTCGAGGGTTGGATAAGG
CTTTGCTTTACACGGCCATTACCCGCGCGCGTGAATGTTTTGTGTTTTGGGGAAATGCAGAGGAATTGTGTCAGGCTGTG
GGATGCCATCAAAAACGCAGGACAGCATTGGCCGATGCCTTGAAATGGCAGTTTGAACAGTCTGATGAGCAGGCTTCCGT
TTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (124-288)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (495-545)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD	Neisseria gonorrhoeae strain FA1090	58.752	98.296	0.578