Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FAH67_RS03305 Genome accession   NZ_CP039886
Coordinates   631051..631854 (+) Length   267 a.a.
NCBI ID   WP_003680807.1    Uniprot ID   A0AAW6Y2T7
Organism   Neisseria flavescens strain ATCC 13120     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 626051..636854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH67_RS03275 (FAH67_03275) - 626293..626817 (-) 525 WP_003680815.1 RDD family protein -
  FAH67_RS03280 (FAH67_03280) - 626909..627328 (-) 420 WP_003680813.1 hypothetical protein -
  FAH67_RS03285 (FAH67_03285) holA 627475..628476 (-) 1002 WP_003680810.1 DNA polymerase III subunit delta -
  FAH67_RS03290 (FAH67_03290) lptE 628476..628955 (-) 480 WP_003680809.1 LPS assembly lipoprotein LptE -
  FAH67_RS03295 (FAH67_03295) pgeF 629076..629846 (-) 771 WP_003680808.1 peptidoglycan editing factor PgeF -
  FAH67_RS03300 (FAH67_03300) rluD 629928..631052 (-) 1125 WP_003680806.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FAH67_RS03305 (FAH67_03305) comL 631051..631854 (+) 804 WP_003680807.1 outer membrane protein assembly factor BamD Machinery gene
  FAH67_RS03310 (FAH67_03310) - 632177..633334 (+) 1158 WP_003680805.1 ATP phosphoribosyltransferase regulatory subunit -
  FAH67_RS03315 (FAH67_03315) - 633378..634676 (+) 1299 WP_039864038.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31019.98 Da        Isoelectric Point: 8.5345

>NTDB_id=360887 FAH67_RS03305 WP_003680807.1 631051..631854(+) (comL) [Neisseria flavescens strain ATCC 13120]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEISVARYYMKRGAYVAAANRAQKIVSRYQNTRYVEEALAMMELAYKKLDKPQLAADTRRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=360887 FAH67_RS03305 WP_003680807.1 631051..631854(+) (comL) [Neisseria flavescens strain ATCC 13120]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTGAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAATTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAATCCCGTTTTCCAAACGGCCGCTATGCCCAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTATAAAGACGATGAGCCGGAAAAAGCCTTGGCTGCCATTGCGCGCTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCGCTGTACTTGAAAGGTTTGGTCCTGTTTAACGAAGACCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCCGACCGTGACCCGAAAGCCAACCGCGATGCTTATCAGGCGTTTGCCGAGTTGGTGCAACGTTATCCAAACAGC
AAATACGCTGCCGATGCAACCGAGCGTATGGCCAAGCTGGTGGACGCTTTGGGCGGTAACGAGATATCTGTGGCGCGTTA
TTACATGAAACGCGGTGCTTATGTCGCAGCGGCCAACCGTGCGCAAAAAATCGTCAGCCGTTACCAAAATACCCGTTACG
TTGAAGAAGCTTTGGCGATGATGGAATTGGCGTACAAAAAACTGGACAAGCCGCAACTGGCTGCCGATACACGCCGTGTT
TTGGAAACCAACTTCCCGCAAAGCCCGTTCTTGCAACACGAATGGCGATCTGACGATATGCCTTGGTGGCGTTACTGGCG
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

88.346

99.625

0.88
  comL Neisseria gonorrhoeae MS11

87.594

99.625

0.873

Multiple sequence alignment