Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   GVI48_RS20140 Genome accession   NZ_CP047697
Coordinates   4378430..4379101 (-) Length   223 a.a.
NCBI ID   WP_003090494.1    Uniprot ID   A0A0H2ZC88
Organism   Pseudomonas aeruginosa strain RD1-3     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4373430..4384101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI48_RS30050 - 4374767..4375786 (+) 1020 Protein_3980 chemotaxis protein -
  GVI48_RS30055 - 4376156..4376692 (+) 537 Protein_3981 methyl-accepting chemotaxis protein -
  GVI48_RS20130 - 4376697..4377005 (-) 309 WP_003097699.1 hypothetical protein -
  GVI48_RS20135 carS 4377096..4378433 (-) 1338 WP_023091231.1 two-component system sensor histidine kinase CarS -
  GVI48_RS20140 ciaR 4378430..4379101 (-) 672 WP_003090494.1 two-component system response regulator CarR Regulator
  GVI48_RS20145 - 4379101..4379415 (-) 315 WP_003097704.1 PepSY domain-containing protein -
  GVI48_RS20150 - 4379415..4379723 (-) 309 WP_003090497.1 PepSY domain-containing protein -
  GVI48_RS20155 - 4379938..4381020 (+) 1083 WP_003113385.1 hypothetical protein -
  GVI48_RS20160 - 4381047..4381940 (+) 894 WP_023091230.1 hypothetical protein -
  GVI48_RS20165 - 4381924..4382190 (+) 267 WP_003090500.1 DUF5329 domain-containing protein -
  GVI48_RS20170 - 4382191..4383384 (-) 1194 WP_023091229.1 NnrS family protein -
  GVI48_RS20175 ppyR 4383371..4383628 (-) 258 WP_003090502.1 psl/pyoverdine operon transcriptional regulator PpyR -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24729.20 Da        Isoelectric Point: 5.8445

>NTDB_id=360887 GVI48_RS20140 WP_003090494.1 4378430..4379101(-) (ciaR) [Pseudomonas aeruginosa strain RD1-3]
MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGLEILQEWRGLGLATPVLILTA
RGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAHGLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLR
YFMLHPGQVLSKGHLAEHLYDGETERDSNVIEVHVNHLRRKLGREVIETRRGQGYRYAGVAAG

Nucleotide


Download         Length: 672 bp        

>NTDB_id=360887 GVI48_RS20140 WP_003090494.1 4378430..4379101(-) (ciaR) [Pseudomonas aeruginosa strain RD1-3]
ATGCGGTTGCTGCTGGTTGAGGATCACGTTCCCCTGGCCGACGAACTGATGGCCAGCCTGACCCGCCAGGGCTACGCGGT
GGACTGGCTGGCCGACGGCCGCGACGCGGCGGTGCAGGGCGCCAGCGAACCCTACGACCTGATCATCCTCGACCTCGGCC
TACCCGGGCGTCCCGGCCTGGAGATACTCCAGGAGTGGCGTGGGCTGGGACTCGCGACTCCGGTGCTGATCCTCACCGCG
CGCGGTTCCTGGGCCGAACGCATCGATGGGCTCAAGGCCGGTGCCGACGACTACCTGACCAAGCCGTTCCATCCGGAAGA
GCTGGCCTTGCGCATCCAGGCCCTGTTGCGCCGCGCCCATGGGCTGGCCAACCAGAGCCAGCTGGAGGCCGCCGGGCTGC
GCCTGGACGAGCAGCGCCAGTGCGTGTGCCTGAACGGCGCCGACGTTGACCTGACCGCCGCCGAATTCCGCCTGCTGCGC
TATTTCATGCTGCACCCCGGCCAGGTCCTGTCCAAGGGGCACCTGGCCGAGCATCTGTACGACGGCGAGACCGAACGCGA
TTCCAACGTCATCGAGGTCCACGTCAACCACCTGCGGCGCAAGCTCGGCCGCGAGGTGATCGAGACCCGCCGTGGCCAGG
GCTACCGCTACGCCGGGGTGGCCGCCGGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

37.727

98.655

0.372
  ciaR Streptococcus pneumoniae Rx1

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae D39

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae R6

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae TIGR4

37.273

98.655

0.368
  micA Streptococcus pneumoniae Cp1015

35.683

100

0.363
  vicR Streptococcus mutans UA159

35.526

100

0.363

Multiple sequence alignment