Detailed information NTG0360610

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FA956_RS21985
• Genome accession: NZ_CP039791
• Coordinates: 4424063..4424863 (+)
• Length: 266 a.a.
• NCBI ID: WP_101862350.1
• Uniprot ID: A0AAW8XS49
• Organism: Klebsiella quasipneumoniae strain C3001
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4419063..4429863

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FA956_RS21950 (FA956_22285)	gspH	4419216..4419731 (+)	516	WP_101862353.1	type II secretion system minor pseudopilin GspH	-
FA956_RS21955 (FA956_22290)	gspI	4419728..4420093 (+)	366	WP_032452553.1	type II secretion system minor pseudopilin GspI	-
FA956_RS21960 (FA956_22295)	gspJ	4420090..4420686 (+)	597	WP_023292022.1	type II secretion system minor pseudopilin GspJ	-
FA956_RS21965 (FA956_22300)	gspK	4420683..4421663 (+)	981	WP_077259115.1	type II secretion system minor pseudopilin GspK	-
FA956_RS21970 (FA956_22305)	gspL	4421656..4422852 (+)	1197	WP_101862351.1	type II secretion system protein GspL	-
FA956_RS21975 (FA956_22310)	-	4422845..4423330 (+)	486	WP_023292019.1	type II secretion system protein M	-
FA956_RS21980 (FA956_22315)	-	4423320..4424048 (+)	729	WP_023292018.1	type II secretion system protein N	-
FA956_RS21985 (FA956_22320)	pilD	4424063..4424863 (+)	801	WP_101862350.1	prepilin peptidase	Machinery gene
FA956_RS21990 (FA956_22325)	hrpB	4424911..4427340 (-)	2430	WP_064155382.1	ATP-dependent helicase HrpB	-
FA956_RS21995 (FA956_22330)	thpR	4427413..4427949 (+)	537	WP_023292015.1	RNA 2',3'-cyclic phosphodiesterase	-
FA956_RS22000 (FA956_22335)	sfsA	4427949..4428665 (+)	717	WP_023292014.1	DNA/RNA nuclease SfsA	-
FA956_RS22005 (FA956_22340)	dksA	4428828..4429283 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29231.79 Da
• Isoelectric Point: 8.6099

>NTDB_id=360610 FA956_RS21985 WP_101862350.1 4424063..4424863(+) (pilD) [Klebsiella quasipneumoniae strain C3001]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDEPITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GLRARCCQARISWSYPLTELATGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLLASASGLAWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=360610 FA956_RS21985 WP_101862350.1 4424063..4424863(+) (pilD) [Klebsiella quasipneumoniae strain C3001]
ATGACGACATTAGCCGCATTATCGCTGCATTTTCCCCTTGTCTGGTATGGTTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGACCCAAACCGCGGACGACGAGCCGATAACCCTCAGCA
CGCCGGGCTCATCCTGCCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCTTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGGCTACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCCCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCAGCGGGCTGGCGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.811	99.624	0.496
pilD	Vibrio campbellii strain DS40M4	46.57	100	0.485
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425