Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FAZ25_RS02275 Genome accession   NZ_CP039736
Coordinates   435755..436300 (-) Length   181 a.a.
NCBI ID   WP_004899568.1    Uniprot ID   A0A7L8UXT3
Organism   Leuconostoc sp. LN180020     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 430755..441300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ25_RS02255 (FAZ25_02245) dnaB 431287..432753 (-) 1467 WP_004899562.1 replicative DNA helicase -
  FAZ25_RS02260 (FAZ25_02250) rplI 432755..433207 (-) 453 WP_048801836.1 50S ribosomal protein L9 -
  FAZ25_RS02265 (FAZ25_02255) - 433257..435287 (-) 2031 WP_004899564.1 DHH family phosphoesterase -
  FAZ25_RS02270 (FAZ25_02260) rpsR 435436..435720 (-) 285 WP_004904499.1 30S ribosomal protein S18 -
  FAZ25_RS02275 (FAZ25_02265) ssb 435755..436300 (-) 546 WP_004899568.1 single-stranded DNA-binding protein Machinery gene
  FAZ25_RS02280 (FAZ25_02270) rpsF 436333..436629 (-) 297 WP_004899569.1 30S ribosomal protein S6 -
  FAZ25_RS02285 (FAZ25_02275) - 436795..437100 (-) 306 WP_004899571.1 hypothetical protein -
  FAZ25_RS02290 (FAZ25_02280) pepV 437156..438607 (-) 1452 WP_040189773.1 dipeptidase PepV -
  FAZ25_RS02295 (FAZ25_02285) - 438628..439452 (-) 825 WP_004904505.1 energy-coupling factor transporter transmembrane protein EcfT -
  FAZ25_RS02300 (FAZ25_02290) - 439449..441146 (-) 1698 WP_040176536.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19786.54 Da        Isoelectric Point: 4.8246

>NTDB_id=360572 FAZ25_RS02275 WP_004899568.1 435755..436300(-) (ssb) [Leuconostoc sp. LN180020]
MINRVVLIGRLTRDVELRYTQSGTAVGTFSLAVNRQFTNQSGEREADFINAVIWRKAAENFANFTGKGALVAVEGRLQTR
NYENNQGQRVYVTEVVVDNFSLLESRAESDKRRAQNGTSATTPSNDNHFGGSESNNNFNAVDPFAGANQNTQKSTATSEA
PNPFAASGKTEIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=360572 FAZ25_RS02275 WP_004899568.1 435755..436300(-) (ssb) [Leuconostoc sp. LN180020]
ATGATTAATCGAGTAGTATTGATTGGGCGATTGACCCGGGATGTGGAATTACGCTATACGCAATCGGGTACAGCGGTCGG
CACGTTTAGCTTGGCGGTAAATCGCCAGTTCACTAATCAATCTGGTGAACGTGAAGCTGACTTTATTAACGCCGTTATCT
GGCGAAAAGCAGCGGAAAATTTTGCAAATTTCACTGGTAAGGGCGCTTTAGTCGCTGTCGAGGGTCGTTTGCAGACAAGA
AATTATGAAAATAATCAAGGCCAGCGTGTATACGTTACCGAGGTTGTTGTCGATAATTTCTCATTACTTGAATCACGTGC
TGAAAGCGATAAGCGTCGTGCCCAAAATGGTACGTCAGCAACAACACCTTCAAATGATAATCATTTTGGTGGTAGTGAAA
GTAATAATAACTTTAATGCTGTTGATCCTTTTGCTGGTGCAAATCAAAACACCCAAAAATCAACTGCAACAAGTGAAGCA
CCTAACCCATTTGCGGCTAGTGGCAAAACAGAAATTGATATATCAGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L8UXT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.536

100

0.635
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.128

100

0.541

Multiple sequence alignment