Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FAZ30_RS15910 Genome accession   NZ_CP039731
Coordinates   3399040..3399831 (-) Length   263 a.a.
NCBI ID   WP_124640858.1    Uniprot ID   -
Organism   Aquitalea aquatilis strain THG-DN7.12     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3394040..3404831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ30_RS15900 purL 3394509..3398468 (-) 3960 WP_137009824.1 phosphoribosylformylglycinamidine synthase -
  FAZ30_RS15905 - 3398616..3398954 (+) 339 WP_103524502.1 P-II family nitrogen regulator -
  FAZ30_RS15910 comL 3399040..3399831 (-) 792 WP_124640858.1 outer membrane protein assembly factor BamD Machinery gene
  FAZ30_RS15915 rluD 3399830..3400930 (+) 1101 WP_124640856.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FAZ30_RS15920 pgeF 3400917..3401675 (+) 759 WP_137009825.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30170.29 Da        Isoelectric Point: 7.3400

>NTDB_id=360553 FAZ30_RS15910 WP_124640858.1 3399040..3399831(-) (comL) [Aquitalea aquatilis strain THG-DN7.12]
MKRYVVAAMLVMGLAGCATTETYDETRGWTVEKLYSEARDELNSGNYTRAVKLYETLEARYPYGRYAQQAEMDLAYTHYK
DNEPELAIAAADRFIKLHPAHPNVDYMYYLKGLVYYNDDQGMLSKWAGQDMSERDPKAARESFLAFRELTSRFPGSKYSA
DALAKMDRLVDALGGSEMHVARYYMKRTAYLAAANRAQGVVKEYSNTKYPEEALALMVTAYDKLGMTQLSSDAKRVLALN
YPKSAYLSQPWTVEEMPWWKVWK

Nucleotide


Download         Length: 792 bp        

>NTDB_id=360553 FAZ30_RS15910 WP_124640858.1 3399040..3399831(-) (comL) [Aquitalea aquatilis strain THG-DN7.12]
ATGAAAAGATACGTTGTAGCAGCAATGTTGGTGATGGGGCTTGCCGGTTGTGCAACCACGGAAACCTACGACGAAACGCG
CGGCTGGACCGTGGAAAAGCTCTACTCGGAAGCTCGGGATGAACTGAATAGCGGTAATTATACCCGTGCTGTCAAGCTGT
ACGAAACGCTGGAAGCGCGCTACCCCTATGGTCGCTACGCCCAGCAGGCCGAAATGGACCTGGCCTATACCCATTACAAG
GACAATGAACCGGAGCTGGCGATCGCCGCTGCCGACCGCTTTATCAAGCTGCATCCGGCTCACCCGAATGTGGATTACAT
GTACTACCTCAAGGGCCTGGTGTATTACAACGACGACCAGGGCATGTTGTCGAAATGGGCTGGTCAGGACATGAGCGAGC
GCGACCCCAAGGCCGCCCGCGAATCATTCCTGGCTTTCCGCGAACTGACCAGCCGTTTCCCCGGCAGCAAGTATAGTGCG
GATGCGCTGGCAAAGATGGATCGTTTGGTGGATGCGCTGGGCGGCAGTGAAATGCACGTGGCCCGTTACTACATGAAGCG
CACCGCCTACCTGGCCGCCGCCAACCGCGCCCAGGGTGTGGTGAAAGAGTATTCCAACACCAAGTATCCGGAAGAAGCGC
TGGCGCTGATGGTGACCGCCTACGACAAGCTGGGCATGACTCAGCTCAGCAGCGATGCCAAGCGCGTGCTGGCCCTGAAC
TACCCCAAGAGCGCCTATCTGTCCCAGCCGTGGACAGTCGAGGAAATGCCTTGGTGGAAGGTGTGGAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

57.895

100

0.586
  comL Neisseria gonorrhoeae MS11

56.391

100

0.57

Multiple sequence alignment