Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   I33_RS19565 Genome accession   NC_017195
Coordinates   3953373..3954167 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3948373..3959167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS19550 (I33_4204) rocD 3948948..3950153 (-) 1206 WP_014478537.1 ornithine aminotransferase -
  I33_RS19555 (I33_4205) rocR 3950394..3951776 (+) 1383 WP_014478538.1 arginine utilization regulatory protein RocR -
  I33_RS21125 - 3951758..3951909 (-) 152 Protein_3941 ATP-binding protein -
  I33_RS21130 - 3951937..3952068 (-) 132 Protein_3942 hypothetical protein -
  I33_RS19560 (I33_4206) htrA 3952089..3953291 (-) 1203 WP_014478539.1 serine protease HtrC Regulator
  I33_RS19565 (I33_4207) vicX 3953373..3954167 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  I33_RS19570 (I33_4208) walI 3954189..3955031 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  I33_RS19575 (I33_4209) walH 3955018..3956385 (-) 1368 WP_014478540.1 WalRK two-component regulatory system regulator WalH -
  I33_RS19580 (I33_4210) walK 3956375..3958210 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  I33_RS19585 (I33_4211) walR 3958218..3958925 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=36054 I33_RS19565 WP_003226939.1 3953373..3954167(-) (vicX) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=36054 I33_RS19565 WP_003226939.1 3953373..3954167(-) (vicX) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTGCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAGTCGTTTGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTGTTCC
ATTATAACGGCCGAAAGCTCGCATTAATGACAGATACGGGATATGTCAGCGACCGAATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTACAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53

Multiple sequence alignment