Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   FAY30_RS17845 Genome accession   NZ_CP039727
Coordinates   3662009..3662767 (-) Length   252 a.a.
NCBI ID   WP_149871142.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3657009..3667767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS17820 (FAY30_17820) - 3657289..3657861 (-) 573 WP_149871137.1 Maf family protein -
  FAY30_RS17825 (FAY30_17825) - 3658141..3659217 (-) 1077 WP_149871138.1 hypothetical protein -
  FAY30_RS17830 (FAY30_17830) - 3659352..3660119 (-) 768 WP_149871139.1 hypothetical protein -
  FAY30_RS17835 (FAY30_17835) - 3660116..3660997 (-) 882 WP_149871140.1 PilN domain-containing protein -
  FAY30_RS17840 (FAY30_17840) pilM 3660997..3661992 (-) 996 WP_149871141.1 type IV pilus biogenesis protein PilM -
  FAY30_RS17845 (FAY30_17845) comC 3662009..3662767 (-) 759 WP_149871142.1 prepilin peptidase Machinery gene
  FAY30_RS17850 (FAY30_17850) - 3662767..3663237 (-) 471 WP_149871143.1 type II secretion system protein -
  FAY30_RS17855 (FAY30_17855) - 3663378..3664592 (-) 1215 WP_149871144.1 type II secretion system F family protein -
  FAY30_RS17860 (FAY30_17860) pilT 3664585..3665634 (-) 1050 WP_149871145.1 type IV pilus twitching motility protein PilT Machinery gene
  FAY30_RS17865 (FAY30_17865) - 3665647..3667308 (-) 1662 WP_149871146.1 GspE/PulE family protein -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 27787.82 Da        Isoelectric Point: 9.0546

>NTDB_id=360470 FAY30_RS17845 WP_149871142.1 3662009..3662767(-) (comC) [Bacillus sp. S3]
MVVILILFLYGLILGSFFNVIGLRIPLKESIVTPSSACPTCGHQLKPYELIPVLSYLFQRGKCRGCQSRISPIYPIFELL
TGLLFMTAPLVIGWSGELVVALTLISMFMIIVVSDIHYMIIPDKILIWFAGIFLLERIVWPLSPWWDSLLGAITGFVVLL
LIALVSKGGMGGGDVKLYAVLGLVLGVKLVLLSFFLSTLLGAVFGGLALLLKIVKRRQPVPFGPFIAAGTLIAYYWGSEI
IDFYIQFLQQGF

Nucleotide


Download         Length: 759 bp        

>NTDB_id=360470 FAY30_RS17845 WP_149871142.1 3662009..3662767(-) (comC) [Bacillus sp. S3]
ATGGTTGTAATTTTAATTCTTTTTTTGTATGGACTTATACTAGGCTCCTTCTTTAATGTAATTGGCCTACGAATTCCTTT
AAAAGAATCAATTGTCACACCAAGCTCTGCTTGTCCAACTTGCGGGCATCAATTAAAACCATACGAACTAATACCAGTAT
TATCATATTTATTTCAAAGGGGAAAATGCCGCGGCTGTCAGTCGCGGATTTCTCCTATCTATCCGATATTTGAATTACTT
ACTGGATTACTGTTCATGACGGCACCATTGGTTATTGGGTGGTCTGGAGAATTAGTGGTGGCACTTACGCTAATCTCAAT
GTTTATGATTATCGTGGTTTCAGATATTCACTATATGATCATCCCTGATAAAATTCTAATTTGGTTTGCAGGGATTTTTT
TATTGGAACGAATTGTTTGGCCGTTGAGCCCTTGGTGGGACAGCCTTTTAGGGGCTATTACAGGATTTGTTGTCCTTCTC
CTCATCGCTCTTGTCAGTAAAGGCGGAATGGGCGGTGGCGATGTGAAACTGTACGCAGTACTTGGATTAGTTTTAGGTGT
AAAACTAGTGCTTTTGTCCTTCTTCCTTTCAACATTATTAGGAGCCGTTTTTGGCGGATTGGCTTTACTTTTGAAAATTG
TTAAAAGACGGCAGCCGGTGCCATTTGGTCCGTTTATCGCTGCTGGAACATTGATAGCATATTATTGGGGATCGGAAATT
ATTGATTTTTATATACAATTCCTTCAACAAGGATTTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)

Type IV leader peptidase family (Peptidase_A24)

(103-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

51.037

95.635

0.488
  pilD Vibrio cholerae strain A1552

33.456

100

0.361

Multiple sequence alignment