Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | FAY30_RS16935 | Genome accession | NZ_CP039727 |
| Coordinates | 3489614..3490732 (-) | Length | 372 a.a. |
| NCBI ID | WP_223820795.1 | Uniprot ID | - |
| Organism | Bacillus sp. S3 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3484614..3495732
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FAY30_RS16895 (FAY30_16895) | - | 3485573..3486364 (+) | 792 | WP_149870967.1 | YqhG family protein | - |
| FAY30_RS16900 (FAY30_16900) | - | 3486447..3486632 (-) | 186 | WP_149870968.1 | YqzE family protein | - |
| FAY30_RS16905 (FAY30_16905) | comGG | 3486694..3487077 (-) | 384 | WP_190284673.1 | competence type IV pilus minor pilin ComGG | - |
| FAY30_RS16910 (FAY30_16910) | comGF | 3487074..3487550 (-) | 477 | WP_223820794.1 | competence type IV pilus minor pilin ComGF | - |
| FAY30_RS16915 (FAY30_16915) | - | 3487498..3487836 (-) | 339 | WP_190284674.1 | hypothetical protein | - |
| FAY30_RS16920 (FAY30_16920) | comGD | 3487820..3488260 (-) | 441 | WP_149870971.1 | competence type IV pilus minor pilin ComGD | - |
| FAY30_RS16925 (FAY30_16925) | comGC | 3488260..3488580 (-) | 321 | WP_149870972.1 | competence type IV pilus major pilin ComGC | - |
| FAY30_RS16930 (FAY30_16930) | comGB | 3488596..3489627 (-) | 1032 | WP_149870973.1 | competence type IV pilus assembly protein ComGB | - |
| FAY30_RS16935 (FAY30_16935) | comGA | 3489614..3490732 (-) | 1119 | WP_223820795.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FAY30_RS16940 (FAY30_16940) | - | 3490995..3491693 (+) | 699 | WP_149870974.1 | helix-turn-helix transcriptional regulator | - |
| FAY30_RS16945 (FAY30_16945) | - | 3491778..3492020 (+) | 243 | WP_007086339.1 | DUF2626 domain-containing protein | - |
| FAY30_RS16950 (FAY30_16950) | - | 3492059..3493150 (-) | 1092 | WP_149870975.1 | class I SAM-dependent methyltransferase | - |
| FAY30_RS16955 (FAY30_16955) | - | 3493304..3493939 (-) | 636 | WP_149870976.1 | MBL fold metallo-hydrolase | - |
| FAY30_RS16960 (FAY30_16960) | - | 3494147..3494323 (+) | 177 | WP_149870977.1 | DUF2759 domain-containing protein | - |
| FAY30_RS16965 (FAY30_16965) | - | 3494354..3495493 (-) | 1140 | WP_190284675.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 372 a.a. Molecular weight: 41885.65 Da Isoelectric Point: 9.5642
>NTDB_id=360465 FAY30_RS16935 WP_223820795.1 3489614..3490732(-) (comGA) [Bacillus sp. S3]
MSKYMQRQNKKVVLPIVSAIEILANRIITDAARNQATDIHIIPRKKDTLVQIRLTNKLIPRLSLPKDECDRLISHFKFTA
NMDIGERRRPQSGAIFCEVDGQLMGLRLSTLPSNNRESLVIRLLPQQEQIPFHQLSLFPAMTRKLLALLKHAHGLIIFTG
PTGSGKTTTLYSLLNETAHLFHRNVITLEDPIEKNYDSVLQVQVNEKAGVTYAAGLKAILRHDPDIIMVGEIRDAETAKI
AVRAALTGHLVLSTMHTRDAKGAVYRLREFGVNWLEVEQTLIAVTAQRLVELTCPFCEGECSPLCYSYGRWKRASVFELL
SGRNLNTAMKAAKGEKVETHYRTLSKVINKGIALGYIQESEYERLVFADETT
MSKYMQRQNKKVVLPIVSAIEILANRIITDAARNQATDIHIIPRKKDTLVQIRLTNKLIPRLSLPKDECDRLISHFKFTA
NMDIGERRRPQSGAIFCEVDGQLMGLRLSTLPSNNRESLVIRLLPQQEQIPFHQLSLFPAMTRKLLALLKHAHGLIIFTG
PTGSGKTTTLYSLLNETAHLFHRNVITLEDPIEKNYDSVLQVQVNEKAGVTYAAGLKAILRHDPDIIMVGEIRDAETAKI
AVRAALTGHLVLSTMHTRDAKGAVYRLREFGVNWLEVEQTLIAVTAQRLVELTCPFCEGECSPLCYSYGRWKRASVFELL
SGRNLNTAMKAAKGEKVETHYRTLSKVINKGIALGYIQESEYERLVFADETT
Nucleotide
Download Length: 1119 bp
>NTDB_id=360465 FAY30_RS16935 WP_223820795.1 3489614..3490732(-) (comGA) [Bacillus sp. S3]
ATGTCGAAATATATGCAAAGACAAAATAAAAAGGTGGTGTTACCAATTGTTAGTGCGATTGAAATTTTAGCGAATCGGAT
TATCACAGATGCAGCACGGAACCAAGCGACAGATATTCACATAATACCGCGAAAGAAGGACACACTTGTTCAAATCCGTT
TAACCAACAAACTCATTCCCCGGTTATCCCTTCCAAAAGATGAATGCGACAGATTAATCTCACACTTTAAATTTACAGCA
AATATGGATATCGGTGAAAGAAGACGCCCCCAAAGCGGTGCCATTTTTTGTGAGGTAGACGGACAATTAATGGGGCTCAG
GCTTTCAACACTCCCCTCTAACAACAGAGAAAGCCTCGTCATCAGGTTATTACCCCAACAAGAACAGATTCCATTCCACC
AGCTTTCATTATTCCCGGCAATGACGCGGAAATTGCTGGCCCTGCTCAAGCACGCCCATGGCTTAATCATCTTTACCGGT
CCCACCGGCAGTGGGAAGACGACTACTCTCTATTCTCTTTTAAATGAAACAGCCCACTTATTTCATCGCAATGTCATCAC
ATTAGAAGATCCTATCGAAAAAAACTATGACTCTGTTCTTCAGGTACAAGTGAATGAAAAAGCAGGCGTAACCTATGCTG
CTGGTTTAAAGGCGATTCTTCGCCACGATCCCGACATTATCATGGTTGGAGAAATCAGGGATGCTGAAACCGCTAAAATT
GCCGTCAGAGCGGCCCTTACAGGGCATTTAGTACTCTCAACTATGCATACAAGAGATGCCAAGGGAGCAGTTTACCGCCT
CCGTGAATTTGGTGTGAATTGGCTGGAGGTCGAGCAAACATTAATTGCGGTAACCGCTCAAAGACTAGTAGAACTTACGT
GCCCATTCTGCGAAGGTGAATGTTCGCCCTTATGTTATTCCTATGGAAGGTGGAAACGAGCGAGTGTGTTTGAACTGTTG
TCTGGAAGAAATTTAAACACAGCGATGAAAGCGGCAAAAGGGGAAAAAGTCGAAACACATTACAGAACCCTTAGTAAGGT
GATTAACAAGGGGATTGCACTTGGATACATTCAAGAGTCGGAGTATGAACGGCTGGTGTTTGCTGATGAAACCACGTAA
ATGTCGAAATATATGCAAAGACAAAATAAAAAGGTGGTGTTACCAATTGTTAGTGCGATTGAAATTTTAGCGAATCGGAT
TATCACAGATGCAGCACGGAACCAAGCGACAGATATTCACATAATACCGCGAAAGAAGGACACACTTGTTCAAATCCGTT
TAACCAACAAACTCATTCCCCGGTTATCCCTTCCAAAAGATGAATGCGACAGATTAATCTCACACTTTAAATTTACAGCA
AATATGGATATCGGTGAAAGAAGACGCCCCCAAAGCGGTGCCATTTTTTGTGAGGTAGACGGACAATTAATGGGGCTCAG
GCTTTCAACACTCCCCTCTAACAACAGAGAAAGCCTCGTCATCAGGTTATTACCCCAACAAGAACAGATTCCATTCCACC
AGCTTTCATTATTCCCGGCAATGACGCGGAAATTGCTGGCCCTGCTCAAGCACGCCCATGGCTTAATCATCTTTACCGGT
CCCACCGGCAGTGGGAAGACGACTACTCTCTATTCTCTTTTAAATGAAACAGCCCACTTATTTCATCGCAATGTCATCAC
ATTAGAAGATCCTATCGAAAAAAACTATGACTCTGTTCTTCAGGTACAAGTGAATGAAAAAGCAGGCGTAACCTATGCTG
CTGGTTTAAAGGCGATTCTTCGCCACGATCCCGACATTATCATGGTTGGAGAAATCAGGGATGCTGAAACCGCTAAAATT
GCCGTCAGAGCGGCCCTTACAGGGCATTTAGTACTCTCAACTATGCATACAAGAGATGCCAAGGGAGCAGTTTACCGCCT
CCGTGAATTTGGTGTGAATTGGCTGGAGGTCGAGCAAACATTAATTGCGGTAACCGCTCAAAGACTAGTAGAACTTACGT
GCCCATTCTGCGAAGGTGAATGTTCGCCCTTATGTTATTCCTATGGAAGGTGGAAACGAGCGAGTGTGTTTGAACTGTTG
TCTGGAAGAAATTTAAACACAGCGATGAAAGCGGCAAAAGGGGAAAAAGTCGAAACACATTACAGAACCCTTAGTAAGGT
GATTAACAAGGGGATTGCACTTGGATACATTCAAGAGTCGGAGTATGAACGGCTGGTGTTTGCTGATGAAACCACGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
55.775 |
95.43 |
0.532 |
| pilB | Glaesserella parasuis strain SC1401 |
40.057 |
94.624 |
0.379 |