Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FAY30_RS07670 Genome accession   NZ_CP039727
Coordinates   1603699..1605519 (+) Length   606 a.a.
NCBI ID   WP_149869317.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1598699..1610519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS07650 (FAY30_07650) spxA 1599225..1599620 (+) 396 WP_149869313.1 transcriptional regulator SpxA -
  FAY30_RS07655 (FAY30_07655) mecA 1599938..1600609 (+) 672 WP_149869314.1 adaptor protein MecA Regulator
  FAY30_RS07660 (FAY30_07660) cls 1600687..1602198 (+) 1512 WP_149869315.1 cardiolipin synthase -
  FAY30_RS07665 (FAY30_07665) - 1602368..1603567 (+) 1200 WP_149869316.1 competence protein CoiA -
  FAY30_RS07670 (FAY30_07670) pepF 1603699..1605519 (+) 1821 WP_149869317.1 oligoendopeptidase F Regulator
  FAY30_RS07675 (FAY30_07675) - 1606052..1606930 (-) 879 WP_149869318.1 ClpXP adapter SpxH family protein -
  FAY30_RS07680 (FAY30_07680) - 1606914..1607324 (-) 411 WP_149872633.1 globin -
  FAY30_RS07685 (FAY30_07685) - 1607458..1608039 (-) 582 WP_149869319.1 CYTH domain-containing protein -
  FAY30_RS07690 (FAY30_07690) - 1608201..1608560 (+) 360 WP_149869320.1 hypothetical protein -
  FAY30_RS07695 (FAY30_07695) - 1608590..1609228 (+) 639 WP_149869321.1 GTP pyrophosphokinase family protein -
  FAY30_RS07700 (FAY30_07700) - 1609277..1610071 (+) 795 WP_149869322.1 NAD kinase -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69724.22 Da        Isoelectric Point: 4.7681

>NTDB_id=360454 FAY30_RS07670 WP_149869317.1 1603699..1605519(+) (pepF) [Bacillus sp. S3]
MANETAVKSLPARSEIAVEDTWNLEDIFASDQEWEKEFQEVKNQIPGIKEFEGKLGESAETLYNALQFQDKLLERIGKLY
TYSHMRYDQDTTNSFYQGLDDRMKNLYSQAASQLAFIVPEILSIDESKVTGFLNEKQELKLYEHALEEINLQRPHVLSAE
QEALLAEAGEVMDASSNTFGMLNNADLQFPTIKDENGEEVEVTHGRYSRFLESGDQRVRRDAFKAVYKTYGDFKNTFSST
LSGNVKKDNFNARVRKYDSARHAALSANNIPESVYDNLVNTVTENLHLLHRYVKLRKKVLGLEELHMYDLYTPLVKDVKM
PIEYDEAKDLVIKGLAPLGEEYVKILKEGFENRWVDVHENKGKRSGAYSSGAYGTHPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKAQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQMAQ
NNEALTADALTKAYYELNKKYFGEEDIVIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIEE
FLSAGSSDYPIEVLKKAGVDMTSADPIKNACKVFEEKLNELEQLLI

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=360454 FAY30_RS07670 WP_149869317.1 1603699..1605519(+) (pepF) [Bacillus sp. S3]
ATGGCAAATGAAACCGCTGTAAAATCTCTACCGGCTAGAAGTGAAATCGCTGTGGAAGACACGTGGAATTTAGAAGATAT
TTTTGCAAGTGATCAAGAATGGGAAAAAGAGTTTCAAGAGGTAAAAAATCAAATTCCAGGGATTAAAGAATTTGAAGGGA
AATTAGGAGAGAGTGCGGAGACACTCTATAATGCGCTACAGTTCCAAGATAAACTGTTAGAACGAATTGGAAAGCTCTAT
ACATACTCACATATGCGCTACGATCAAGACACGACCAATTCTTTTTATCAAGGGCTAGATGACAGAATGAAGAATCTCTA
CTCTCAGGCAGCGAGTCAGTTAGCGTTTATTGTTCCTGAAATTCTTTCAATTGACGAAAGCAAAGTTACAGGTTTCCTCA
ATGAGAAACAGGAGTTAAAACTATATGAACATGCGTTGGAGGAGATTAATCTTCAAAGGCCACACGTGCTGAGTGCGGAG
CAAGAAGCCCTTTTAGCAGAAGCAGGAGAAGTGATGGACGCCTCGAGCAACACCTTTGGGATGCTGAATAATGCCGATCT
TCAATTTCCAACCATTAAAGATGAGAATGGTGAAGAGGTTGAAGTGACCCACGGCCGTTACAGCCGTTTCTTGGAAAGCG
GAGATCAGCGGGTACGCCGCGATGCCTTTAAAGCTGTTTATAAAACGTATGGAGATTTTAAAAATACTTTTTCAAGCACG
TTAAGCGGAAATGTGAAAAAGGACAACTTTAATGCAAGAGTTAGAAAATATGATTCAGCAAGACATGCCGCCCTTTCTGC
AAACAATATTCCGGAAAGTGTTTATGATAATCTTGTCAATACAGTGACCGAAAATCTTCACCTATTACATCGCTATGTTA
AGCTTCGTAAAAAAGTGTTAGGTTTAGAGGAGCTGCACATGTATGACTTATATACCCCGTTAGTAAAAGATGTGAAAATG
CCGATCGAATACGATGAGGCAAAGGATTTAGTCATTAAGGGACTGGCACCATTAGGCGAGGAATATGTGAAAATCTTAAA
AGAAGGTTTTGAAAATCGCTGGGTTGATGTTCACGAAAATAAAGGGAAGCGCAGTGGTGCATACTCTTCTGGAGCATATG
GGACACATCCATATATTTTAATGAATTGGCAGGATAATGTGAATAATTTATTTACATTAGCCCATGAATTTGGCCATTCC
GTGCATAGTTACTATACACGGAAAGCTCAGCCATATCCGTACGGTAACTATTCGATTTTCGTTGCTGAAGTAGCCTCCAC
CTGTAATGAGGCACTATTAAATGATTACCTGTTAAAAACAATTGATGATGAGCAAAAGCGCATTTACCTCCTAAATCATT
ATTTAGAAGGCTTTAGAGGAACTGTGTTCCGCCAGACAATGTTTGCTGAGTTTGAGCATCTCATTCATCAAATGGCACAA
AATAATGAGGCATTAACTGCCGATGCTTTAACAAAGGCCTATTATGAACTGAATAAAAAGTATTTTGGAGAAGAGGATAT
TGTGATTGATGAGGAAATCGGTTTAGAATGGGCAAGAATTCCGCATTTCTATTACAATTACTATGTTTATCAGTACGCAA
CAGGCTTCAGTGCAGCTACCGCTCTTAGTAAGCAGATTTTAGAAGAAGGCGAGCCTGCTGTCAAACGGTATATTGAGGAG
TTCCTAAGTGCCGGAAGCTCAGATTACCCAATTGAAGTACTTAAAAAAGCGGGAGTTGACATGACAAGTGCCGATCCAAT
TAAAAATGCTTGTAAAGTGTTTGAAGAGAAACTGAACGAATTAGAACAATTATTAATATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.244

98.185

0.484

Multiple sequence alignment