Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   FAY30_RS06030 Genome accession   NZ_CP039727
Coordinates   1277341..1277670 (-) Length   109 a.a.
NCBI ID   WP_149869033.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1272341..1282670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS06010 (FAY30_06010) hutH 1273428..1274954 (+) 1527 WP_149869029.1 histidine ammonia-lyase -
  FAY30_RS06015 (FAY30_06015) - 1274989..1275189 (-) 201 WP_149869030.1 hypothetical protein -
  FAY30_RS06020 (FAY30_06020) - 1275766..1276731 (+) 966 WP_149869031.1 carbohydrate kinase family protein -
  FAY30_RS06025 (FAY30_06025) - 1277125..1277271 (+) 147 WP_149869032.1 anti-repressor SinI family protein -
  FAY30_RS06030 (FAY30_06030) sinR 1277341..1277670 (-) 330 WP_149869033.1 helix-turn-helix domain-containing protein Regulator
  FAY30_RS06035 (FAY30_06035) map 1277930..1278679 (+) 750 WP_149869034.1 type I methionyl aminopeptidase -
  FAY30_RS06040 (FAY30_06040) - 1278731..1278955 (-) 225 WP_149869035.1 DUF1128 domain-containing protein -
  FAY30_RS06045 (FAY30_06045) - 1279188..1279556 (+) 369 WP_149869036.1 YtxH domain-containing protein -
  FAY30_RS06050 (FAY30_06050) - 1279577..1280413 (+) 837 WP_149869037.1 YihY/virulence factor BrkB family protein -
  FAY30_RS06055 (FAY30_06055) - 1280645..1282561 (-) 1917 WP_149869038.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12680.47 Da        Isoelectric Point: 6.4774

>NTDB_id=360443 FAY30_RS06030 WP_149869033.1 1277341..1277670(-) (sinR) [Bacillus sp. S3]
MIGDRVKKFRLEKKMSLSELAEQAGVAKSYLSSLERNLQKNPSIQFLEKIAAVLNLPVEHLIHEQIDKDTLDSEWMNLVK
EAMSSGVSKDQFRDFLEFNKWRINQNNND

Nucleotide


Download         Length: 330 bp        

>NTDB_id=360443 FAY30_RS06030 WP_149869033.1 1277341..1277670(-) (sinR) [Bacillus sp. S3]
ATGATTGGTGACCGTGTTAAGAAATTTCGATTAGAAAAGAAGATGTCCTTATCCGAACTTGCAGAACAAGCCGGAGTGGC
AAAATCTTATTTAAGTTCCCTTGAAAGAAATTTGCAAAAAAATCCTTCCATCCAATTTCTTGAAAAAATTGCTGCTGTAT
TAAATCTTCCAGTTGAACATTTAATCCATGAGCAAATCGACAAAGATACACTGGATAGTGAATGGATGAATCTTGTCAAA
GAAGCTATGAGCTCAGGTGTTTCCAAGGACCAATTTCGTGATTTCCTAGAATTTAATAAGTGGAGAATAAATCAAAATAA
TAATGATTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(71-98)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

63.889

99.083

0.633

Multiple sequence alignment