Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FAY30_RS00495 Genome accession   NZ_CP039727
Coordinates   101901..103283 (+) Length   460 a.a.
NCBI ID   WP_149868082.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96901..108283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS00475 (FAY30_00475) - 97218..97679 (+) 462 WP_149868078.1 CtsR family transcriptional regulator -
  FAY30_RS00480 (FAY30_00480) - 97705..98253 (+) 549 WP_149868079.1 UvrB/UvrC motif-containing protein -
  FAY30_RS00485 (FAY30_00485) - 98255..99328 (+) 1074 WP_149868080.1 protein arginine kinase -
  FAY30_RS00490 (FAY30_00490) clpC 99342..101783 (+) 2442 WP_149868081.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  FAY30_RS00495 (FAY30_00495) radA 101901..103283 (+) 1383 WP_149868082.1 DNA repair protein RadA Machinery gene
  FAY30_RS00500 (FAY30_00500) disA 103287..104360 (+) 1074 WP_149868083.1 DNA integrity scanning diadenylate cyclase DisA -
  FAY30_RS00505 (FAY30_00505) - 104565..105653 (+) 1089 WP_149868084.1 PIN/TRAM domain-containing protein -
  FAY30_RS00510 (FAY30_00510) ispD 105700..106392 (+) 693 WP_149868085.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FAY30_RS00515 (FAY30_00515) ispF 106392..106868 (+) 477 WP_149868086.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49798.21 Da        Isoelectric Point: 7.3696

>NTDB_id=360437 FAY30_RS00495 WP_149868082.1 101901..103283(+) (radA) [Bacillus sp. S3]
MAKRKTKFMCQECGYESPKWMGKCPGCGQWNKMIEEVEVTGATRRGAFAHSQGGSTLAAKPMPINSIEMENEPRIQTDLN
ELNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSSQLASKGNQVLYISGEESLRQTKLRAERLGIASENLLVYAETNLEE
INRTIDSTNPSFVIIDSIQTVFHPDVTSAPGSVSQVRECTSELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVL
YFEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEEVGNPSEIFLEERSRGAAGSTVVASMEGTRPVLVEIQALISPT
SFGNPRRMATGIDHNRVPLLMAVLEKRVGMLLANQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDRPTRPTDCIIGEVG
LTGEVRRVSRIEQRVQEAAKLGFERVILPANNLSGWTGPKGVQLIGVSSVSEALQAALGG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=360437 FAY30_RS00495 WP_149868082.1 101901..103283(+) (radA) [Bacillus sp. S3]
ATGGCTAAACGAAAAACAAAATTTATGTGTCAGGAATGCGGGTATGAATCGCCAAAGTGGATGGGGAAATGCCCAGGCTG
CGGACAATGGAATAAGATGATTGAGGAAGTAGAAGTAACGGGTGCTACGAGAAGGGGGGCATTTGCCCATTCTCAGGGGG
GATCGACGCTAGCAGCAAAACCAATGCCCATTAATTCGATTGAAATGGAAAATGAACCAAGGATCCAGACCGACTTAAAT
GAGCTAAATCGTGTTCTGGGCGGCGGTGTGGTAAAGGGTTCGTTAGTATTAATTGGCGGAGACCCGGGGATTGGGAAATC
TACCCTTCTGCTGCAGGTATCTTCACAGCTTGCAAGTAAAGGGAATCAGGTTTTATACATATCTGGTGAAGAGTCGTTAC
GCCAGACAAAGCTTCGGGCGGAACGATTAGGGATTGCCTCAGAAAATCTATTGGTTTATGCAGAAACAAATTTGGAGGAA
ATTAACCGGACAATTGACAGCACCAATCCGAGCTTTGTCATTATTGATTCCATCCAAACTGTTTTTCACCCGGATGTGAC
ATCGGCTCCGGGAAGTGTGTCACAGGTTCGTGAATGTACCTCTGAATTAATGAGAATTGGTAAGACAAAAGGGATTGCCA
TTTTTATTGTTGGACACGTAACAAAGGAGGGATCGATCGCCGGTCCGAGGTTGCTTGAGCATATGGTGGATACCGTGCTT
TATTTTGAAGGGGAAAGACATCACACATACCGTATTTTACGGGCAGTGAAGAACCGCTTTGGTTCCACGAATGAAATGGG
TATTTTTGAAATGAAGGAATTTGGCCTTGAGGAAGTAGGAAATCCATCAGAAATCTTTCTTGAGGAACGGTCCAGGGGAG
CAGCAGGCTCAACAGTCGTGGCTTCCATGGAAGGAACCCGTCCGGTTCTCGTTGAAATCCAAGCATTAATTTCGCCAACG
AGCTTTGGAAACCCAAGAAGAATGGCGACAGGAATTGATCACAACCGTGTGCCTCTCTTAATGGCCGTCTTAGAAAAGCG
GGTTGGGATGCTGCTTGCGAATCAAGATGCCTATTTAAAGGTGGCCGGTGGTGTTAAGTTGGATGAACCGGCGATTGATT
TAGCCATCGCTGTCAGTATTGCCTCCAGTTTCCGGGACCGTCCGACCAGGCCAACTGACTGTATTATTGGCGAAGTAGGT
TTAACCGGTGAGGTAAGAAGGGTATCTAGAATTGAGCAGCGGGTCCAAGAGGCCGCAAAACTAGGCTTTGAGCGCGTGAT
ATTACCGGCAAATAATTTAAGCGGCTGGACGGGGCCAAAAGGGGTTCAACTCATTGGTGTTTCATCCGTTAGTGAGGCAC
TCCAAGCAGCGTTGGGAGGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(368-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(75-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.007

100

0.772
  radA Streptococcus mitis NCTC 12261

61.874

99.783

0.617
  radA Streptococcus pneumoniae Rx1

61.874

99.783

0.617
  radA Streptococcus pneumoniae D39

61.874

99.783

0.617
  radA Streptococcus pneumoniae R6

61.874

99.783

0.617
  radA Streptococcus pneumoniae TIGR4

61.874

99.783

0.617
  radA Streptococcus mitis SK321

61.656

99.783

0.615

Multiple sequence alignment