Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   FAY30_RS00020 Genome accession   NZ_CP039727
Coordinates   3322..4437 (+) Length   371 a.a.
NCBI ID   WP_149868011.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1807..27687 3322..4437 within 0


Gene organization within MGE regions


Location: 1807..27687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS00010 (FAY30_00010) dnaN 1807..2943 (+) 1137 WP_149868010.1 DNA polymerase III subunit beta -
  FAY30_RS00015 (FAY30_00015) yaaA 3088..3303 (+) 216 WP_149872538.1 S4 domain-containing protein YaaA -
  FAY30_RS00020 (FAY30_00020) recF 3322..4437 (+) 1116 WP_149868011.1 DNA replication/repair protein RecF Machinery gene
  FAY30_RS00025 (FAY30_00025) remB 4509..4760 (+) 252 WP_149868012.1 extracellular matrix regulator RemB -
  FAY30_RS00030 (FAY30_00030) gyrB 5010..6935 (+) 1926 WP_411675469.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  FAY30_RS00035 (FAY30_00035) gyrA 6961..9483 (+) 2523 WP_149868013.1 DNA gyrase subunit A -
  FAY30_RS00065 (FAY30_00065) - 15015..15956 (-) 942 WP_149868014.1 YaaC family protein -
  FAY30_RS00070 (FAY30_00070) guaB 16203..17672 (+) 1470 WP_149868015.1 IMP dehydrogenase -
  FAY30_RS00075 (FAY30_00075) - 17916..19217 (+) 1302 WP_223820962.1 serine hydrolase -
  FAY30_RS00080 (FAY30_00080) serS 19800..21077 (+) 1278 WP_149868017.1 serine--tRNA ligase -
  FAY30_RS00090 (FAY30_00090) - 21356..22057 (-) 702 WP_411675470.1 deoxynucleoside kinase -
  FAY30_RS00095 (FAY30_00095) - 22048..22710 (-) 663 WP_149868019.1 deoxynucleoside kinase -
  FAY30_RS00100 (FAY30_00100) - 23017..24303 (-) 1287 WP_149868020.1 LysM peptidoglycan-binding domain-containing protein -
  FAY30_RS00105 (FAY30_00105) - 24340..24915 (-) 576 WP_149868021.1 isochorismatase family cysteine hydrolase -
  FAY30_RS00110 (FAY30_00110) tadA 24994..25512 (+) 519 WP_149868022.1 tRNA adenosine(34) deaminase TadA -
  FAY30_RS00120 (FAY30_00120) dnaX 25996..27687 (+) 1692 WP_149868023.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 43119.82 Da        Isoelectric Point: 7.2780

>NTDB_id=360433 FAY30_RS00020 WP_149868011.1 3322..4437(+) (recF) [Bacillus sp. S3]
MYIEKLALKNYRNYEELFVEFENKVNVILGENAQGKTNVMESIYVLAMAKSHRTASDKELIRWDMEYARIEGRVQKQHSS
LPLELLISKKGKKAKCNHIEQQKLSQYVGNMNVVMFAPEDLNIVKGSPQVRRRFIDMEIGQVSPVYLHDMSQYQKILQQR
NHYLKMMQIKKQTDMTMLEILTEQFIQMAVKIVKRRFEFLKLLENWAKPIHQGISRGLETLEITYKPSVEVLEEQDLSKM
IASFEEKFAKVRLREIERGTTLFGPHRDDLLFFVNGRDVQTFGSQGQQRTTALSVKLAEIELIHNEIGEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVEGIDHQTLREASTFIVESGVMQKV

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=360433 FAY30_RS00020 WP_149868011.1 3322..4437(+) (recF) [Bacillus sp. S3]
ATGTATATTGAAAAGTTAGCGCTGAAAAATTATCGGAATTACGAAGAGTTATTCGTCGAATTTGAAAATAAAGTAAATGT
CATCTTAGGTGAAAATGCTCAAGGAAAAACAAATGTGATGGAATCCATTTACGTGTTAGCGATGGCCAAATCGCATCGAA
CCGCAAGTGATAAAGAACTTATTCGCTGGGACATGGAGTATGCTAGAATAGAAGGCAGGGTTCAAAAACAACATAGCTCT
TTACCTTTGGAATTATTGATTTCCAAAAAGGGCAAGAAGGCAAAATGCAACCATATTGAACAGCAGAAATTAAGCCAATA
TGTTGGGAATATGAATGTCGTCATGTTTGCTCCTGAGGACCTTAACATTGTTAAAGGGAGCCCGCAGGTGCGAAGACGGT
TTATTGATATGGAAATTGGGCAAGTATCGCCCGTTTATTTACATGATATGAGTCAATATCAAAAAATACTTCAACAACGT
AATCATTATTTGAAAATGATGCAGATAAAGAAGCAAACAGATATGACGATGCTTGAAATTTTAACAGAGCAATTTATTCA
AATGGCCGTGAAAATTGTAAAAAGGCGGTTTGAATTTCTTAAACTCCTGGAAAATTGGGCGAAACCAATCCATCAAGGGA
TTTCAAGAGGTCTGGAAACGCTTGAGATTACCTATAAGCCATCTGTAGAGGTATTAGAAGAGCAAGATTTGTCGAAGATG
ATAGCAAGCTTTGAAGAAAAATTTGCAAAGGTTCGATTGAGGGAAATAGAACGCGGTACAACCTTATTCGGCCCTCATCG
CGACGATTTATTGTTTTTTGTTAATGGACGGGATGTTCAAACCTTTGGATCTCAAGGGCAGCAGCGGACAACCGCCCTTT
CAGTCAAGCTTGCCGAGATCGAATTGATTCATAATGAAATTGGCGAATATCCCATTTTACTCCTTGATGATGTGTTATCG
GAATTAGATGACTACAGGCAATCCCATTTACTCAATACCATTCAAGGTAAAGTTCAAACGTTTGTAACGACCACAAGTGT
GGAAGGGATTGACCATCAGACGTTAAGGGAAGCGTCCACCTTTATCGTTGAATCCGGTGTTATGCAAAAAGTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

70.811

99.73

0.706

Multiple sequence alignment