Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GUU88_RS05395 Genome accession   NZ_CP047594
Coordinates   1101819..1102424 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain LD27-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1096819..1107424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUU88_RS05365 (GUU88_05365) rsmS 1097524..1097685 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  GUU88_RS05370 (GUU88_05370) priC 1097699..1098226 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  GUU88_RS05375 (GUU88_05375) ybaN 1098296..1098673 (+) 378 WP_001188905.1 DUF454 family protein -
  GUU88_RS05380 (GUU88_05380) apt 1098826..1099377 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GUU88_RS05385 (GUU88_05385) dnaX 1099506..1101437 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  GUU88_RS05390 (GUU88_05390) ybaB 1101490..1101819 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GUU88_RS05395 (GUU88_05395) recR 1101819..1102424 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GUU88_RS05400 (GUU88_05400) htpG 1102534..1104408 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  GUU88_RS05405 (GUU88_05405) adk 1104589..1105233 (+) 645 WP_001220233.1 adenylate kinase -
  GUU88_RS05410 (GUU88_05410) hemH 1105469..1106431 (+) 963 WP_001250103.1 ferrochelatase -
  GUU88_RS05415 (GUU88_05415) aes 1106428..1107387 (-) 960 Protein_1071 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=360241 GUU88_RS05395 WP_001195025.1 1101819..1102424(+) (recR) [Escherichia coli strain LD27-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=360241 GUU88_RS05395 WP_001195025.1 1101819..1102424(+) (recR) [Escherichia coli strain LD27-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment