Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FAZ90_RS04930 Genome accession   NZ_CP039700
Coordinates   1021313..1022701 (+) Length   462 a.a.
NCBI ID   WP_010437172.1    Uniprot ID   A0AAN0NB30
Organism   Vibrio cyclitrophicus strain ECSMB14105     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016313..1027701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ90_RS04910 (FAZ90_04910) rsxB 1016733..1017326 (-) 594 WP_004734040.1 electron transport complex subunit RsxB -
  FAZ90_RS04915 (FAZ90_04915) rsxA 1017329..1017907 (-) 579 WP_004734039.1 electron transport complex subunit RsxA -
  FAZ90_RS04925 (FAZ90_04925) uvrB 1018980..1021010 (+) 2031 WP_016767675.1 excinuclease ABC subunit UvrB -
  FAZ90_RS04930 (FAZ90_04930) luxO 1021313..1022701 (+) 1389 WP_010437172.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  FAZ90_RS04935 (FAZ90_04935) luxU 1022726..1023070 (+) 345 WP_010437174.1 quorum-sensing phosphorelay protein LuxU -
  FAZ90_RS04940 (FAZ90_04940) - 1023151..1024038 (-) 888 WP_010437175.1 YvcK family protein -
  FAZ90_RS04945 (FAZ90_04945) moaA 1024374..1025363 (+) 990 WP_017632500.1 GTP 3',8-cyclase MoaA -
  FAZ90_RS04955 (FAZ90_04955) moaB 1025722..1026234 (+) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  FAZ90_RS04960 (FAZ90_04960) moaC 1026247..1026726 (+) 480 WP_046209136.1 cyclic pyranopterin monophosphate synthase MoaC -
  FAZ90_RS04965 (FAZ90_04965) moaD 1026723..1026968 (+) 246 WP_046209135.1 molybdopterin synthase sulfur carrier subunit -
  FAZ90_RS04970 (FAZ90_04970) moaE 1026971..1027444 (+) 474 WP_016799415.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51715.26 Da        Isoelectric Point: 6.0301

>NTDB_id=360179 FAZ90_RS04930 WP_010437172.1 1021313..1022701(+) (luxO) [Vibrio cyclitrophicus strain ECSMB14105]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSENPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIESSL
RLKEMQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=360179 FAZ90_RS04930 WP_010437172.1 1021313..1022701(+) (luxO) [Vibrio cyclitrophicus strain ECSMB14105]
ATGCAATCAAAAACGCTAGATAACAAATCAAAGTATTTGTTGATGGTGGAGGATACGGCTTCGGTCGCCGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACAGGTCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCTGACCTCATCTTATTAGATCTGCGCCTTCCTGATATGACGGGTATGGACGTACTATTTGCTGTAAAACAAAAATAC
CCAGAAGTCCCCGTTATCTTCATGACGGCTCACGGCTCTATCGATACCGCAGTAGAAGCCATGCGTCATGGTTCTCAAGA
TTTCCTTATTAAACCTTGTGAAGCCGATCGACTCCGTATAACGGTGAATAACGCGATACGCAAAGCCACTAAACTGAAGA
ACAGTTCTGAAAACCCGGGTAATCAAAACTATCAAGGATTCATCGGTAGTAGCCAAACCATGCAGCAGGTTTATCGAACT
ATCGATTCCGCGGCATCGAGTAAAGCGAGTATTTTCATTACCGGTGAAAGTGGTACCGGAAAAGAGGTGTGTGCAGAAGC
GATTCACGCGGCGAGTAAGCGTGGTGATAAGCCATTCATTGCGATTAACTGTGCGGCTATTCCTAAAGATTTAATCGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCCTTTACTGGCGCTGCAACCGATCGTCAAGGTGCGGCTGAACTTGCCGATGGT
GGAACCTTGTTCCTCGATGAGTTGTGTGAGATGGATCTTGAGCTACAAACCAAGCTTTTGCGTTTTATTCAAACGGGTAC
TTTCCAAAAAGTAGGCTCTTCGAAGATGAAGAGTGTGGATGTTCGTTTTGTATGTGCAACCAACCGAGACCCTTGGAAAG
AAGTCCAAGAAGGTCGCTTTAGAGAAGATTTATACTACCGTTTATATGTAATTCCACTGCACCTACCGCCATTGCGTGAG
CGTGGCGAGGATGTTATCGAGATTGCATATTCACTGCTGGGCTACATGTCTGTTGAGGAAGGTAAGGCCTTTGTTCGTTT
TGCTCAGGAAGTGCTGGACCGCTTTAACCAATACGAGTGGCCGGGTAACGTTCGTCAGCTACAAAATGTGTTGCGAAACG
TGGTGGTACTGAACAATGGTAAAGAGATTACCCTGAACATGCTTCCACCTCCACTGAACCAGCCGATTGAGAGCAGTCTG
CGGTTGAAAGAGATGCAAAATGAAGACATCACTGTAAAAGACATTTTCCCATTGTGGATCACTGAAAAAACAGCGATTGA
ACAGGCCATAAAAGCATGTGATGGCAACATCCCTCGTGCGGCAGGCTTCTTAGATGTCAGTCCATCGACGATATATCGTA
AGTTACAAACGTGGAATGCGAAGCAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.607

96.97

0.84
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37

Multiple sequence alignment