Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   FAZ90_RS02825 Genome accession   NZ_CP039700
Coordinates   553423..554028 (-) Length   201 a.a.
NCBI ID   WP_010435971.1    Uniprot ID   A0AAN0LMY6
Organism   Vibrio cyclitrophicus strain ECSMB14105     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 548423..559028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ90_RS02815 (FAZ90_02815) aceF 549491..551383 (+) 1893 WP_046209164.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  FAZ90_RS02820 (FAZ90_02820) lpdA 551626..553056 (+) 1431 WP_010435969.1 dihydrolipoyl dehydrogenase -
  FAZ90_RS02825 (FAZ90_02825) opaR 553423..554028 (-) 606 WP_010435971.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  FAZ90_RS02830 (FAZ90_02830) hpt 554366..554896 (+) 531 WP_016784912.1 hypoxanthine phosphoribosyltransferase -
  FAZ90_RS02835 (FAZ90_02835) can 554983..555642 (-) 660 WP_010435977.1 carbonate dehydratase -
  FAZ90_RS02840 (FAZ90_02840) - 555929..557551 (+) 1623 WP_016789341.1 SulP family inorganic anion transporter -
  FAZ90_RS02845 (FAZ90_02845) - 557891..558808 (+) 918 WP_010435984.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23279.55 Da        Isoelectric Point: 6.2190

>NTDB_id=360177 FAZ90_RS02825 WP_010435971.1 553423..554028(-) (opaR) [Vibrio cyclitrophicus strain ECSMB14105]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAHDCHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLLQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTQEELSTLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=360177 FAZ90_RS02825 WP_010435971.1 553423..554028(-) (opaR) [Vibrio cyclitrophicus strain ECSMB14105]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
GGTATTCTCTCGCCGCGGCATTGGCCGTGGTGGGCACGCTGATATAGCTGACATTGCTCAGGTATCAGTTGCAACCGTGT
TTAACTACTTCCCAACCCGTGAAGATCTGGTTGATGAAGTACTTAACCACGTCGTTCGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTCGATATTCACGCAAAAGAGAACTTACATAATATTGCGACTGAAATGGTGACGTTGGTGGCTCACGA
TTGCCATTGGTTGAATGTATGGTTTGAATGGAGCGCATCAACCCGTGATGAAGTATGGCCTCTATTCGTAACCACAAACC
GCACTAACCAAATGTTACTACAAAACATGTTTAGCAAAGCGATAGAGCGTGGCGAAGTCTGTGACGACCACGACCCTAAG
CACCTTGCGAATCTGTTCCACGGCATTTGTTACTCGCTATTCATTCAAGCGAAGCGTGTAGATACGCAAGAAGAACTTTC
GACCTTGACGGATAGCTACTTAAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

99.502

0.821
  hapR Vibrio cholerae C6706

74.372

99.005

0.736
  hapR Vibrio cholerae strain A1552

74.372

99.005

0.736

Multiple sequence alignment