Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   GQS72_RS05510 Genome accession   NZ_CP047592
Coordinates   1215623..1216648 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain INP-43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1210623..1221648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQS72_RS05485 (GQS72_05485) - 1210811..1211128 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  GQS72_RS05490 (GQS72_05490) trkA 1211277..1212650 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  GQS72_RS05495 (GQS72_05495) rsmB 1212678..1213982 (-) 1305 WP_003458403.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GQS72_RS05500 (GQS72_05500) fmt 1213979..1214923 (-) 945 WP_003107057.1 methionyl-tRNA formyltransferase -
  GQS72_RS05505 (GQS72_05505) def 1214978..1215484 (-) 507 WP_003107059.1 peptide deformylase -
  GQS72_RS05510 (GQS72_05510) tsaP 1215623..1216648 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GQS72_RS05515 (GQS72_05515) dprA 1216783..1217871 (+) 1089 WP_023085756.1 DNA-processing protein DprA Machinery gene
  GQS72_RS05520 (GQS72_05520) - 1217912..1218469 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  GQS72_RS05525 (GQS72_05525) - 1218479..1219456 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  GQS72_RS05530 (GQS72_05530) hemF 1219647..1220564 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  GQS72_RS05535 (GQS72_05535) aroE 1220622..1221446 (+) 825 WP_016264001.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=360154 GQS72_RS05510 WP_003097294.1 1215623..1216648(+) (tsaP) [Pseudomonas aeruginosa strain INP-43]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=360154 GQS72_RS05510 WP_003097294.1 1215623..1216648(+) (tsaP) [Pseudomonas aeruginosa strain INP-43]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTAGCCACCGAAGGCGACGTCGCGACCCTGGCACTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393