Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   GTW28_RS08450 Genome accession   NZ_CP047485
Coordinates   1587234..1588259 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain BJQ0005     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1582234..1593259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS08415 (GTW28_08415) ylbE 1582534..1582773 (+) 240 WP_046381000.1 YlbE-like family protein -
  GTW28_RS08420 (GTW28_08420) ylbF 1582889..1583338 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  GTW28_RS08425 (GTW28_08425) ylbG 1583393..1583665 (+) 273 WP_015715839.1 YlbG family protein -
  GTW28_RS08430 (GTW28_08430) rsmD 1583988..1584542 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GTW28_RS08435 (GTW28_08435) coaD 1584547..1585032 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  GTW28_RS08440 (GTW28_08440) spoVV 1585043..1586269 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  GTW28_RS08445 (GTW28_08445) ylbK 1586450..1587232 (+) 783 WP_003232221.1 patatin family protein -
  GTW28_RS08450 (GTW28_08450) sepM 1587234..1588259 (+) 1026 WP_003245451.1 protease DdcP Regulator
  GTW28_RS08455 (GTW28_08455) tmcAL 1588276..1589523 (-) 1248 WP_046381001.1 nucleotidyltransferase -
  GTW28_RS08460 (GTW28_08460) - 1589520..1589705 (-) 186 WP_003232215.1 hypothetical protein -
  GTW28_RS08465 (GTW28_08465) ylbN 1589733..1590251 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  GTW28_RS08470 (GTW28_08470) rpmF 1590273..1590452 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  GTW28_RS08475 (GTW28_08475) gerR 1590598..1591179 (+) 582 WP_015715842.1 sporulation specific transcriptional regulator GerR -
  GTW28_RS08480 (GTW28_08480) ylbP 1591236..1591718 (-) 483 WP_014476736.1 N-acetyltransferase -
  GTW28_RS08485 (GTW28_08485) panEA 1591878..1592774 (+) 897 WP_046381002.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=359880 GTW28_RS08450 WP_003245451.1 1587234..1588259(+) (sepM) [Bacillus subtilis strain BJQ0005]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=359880 GTW28_RS08450 WP_003245451.1 1587234..1588259(+) (sepM) [Bacillus subtilis strain BJQ0005]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAATCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402