Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   GTW28_RS08420 Genome accession   NZ_CP047485
Coordinates   1582889..1583338 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain BJQ0005     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1577889..1588338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS08380 (GTW28_08380) ctaE 1577905..1578528 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  GTW28_RS08385 (GTW28_08385) ctaF 1578531..1578863 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  GTW28_RS08390 (GTW28_08390) ctaG 1578891..1579784 (+) 894 WP_046380999.1 cytochrome c oxidase assembly factor CtaG -
  GTW28_RS08395 (GTW28_08395) ylbA 1579816..1580178 (-) 363 WP_003232238.1 YugN family protein -
  GTW28_RS08400 (GTW28_08400) ylbB 1580318..1580764 (+) 447 WP_003221362.1 CBS domain-containing protein -
  GTW28_RS08405 (GTW28_08405) ylbC 1580848..1581888 (+) 1041 WP_015483195.1 CAP domain-containing protein -
  GTW28_RS08410 (GTW28_08410) ylbD 1582120..1582518 (+) 399 WP_003232233.1 YlbD family protein -
  GTW28_RS08415 (GTW28_08415) ylbE 1582534..1582773 (+) 240 WP_046381000.1 YlbE-like family protein -
  GTW28_RS08420 (GTW28_08420) ylbF 1582889..1583338 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  GTW28_RS08425 (GTW28_08425) ylbG 1583393..1583665 (+) 273 WP_015715839.1 YlbG family protein -
  GTW28_RS08430 (GTW28_08430) rsmD 1583988..1584542 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GTW28_RS08435 (GTW28_08435) coaD 1584547..1585032 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  GTW28_RS08440 (GTW28_08440) spoVV 1585043..1586269 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  GTW28_RS08445 (GTW28_08445) ylbK 1586450..1587232 (+) 783 WP_003232221.1 patatin family protein -
  GTW28_RS08450 (GTW28_08450) sepM 1587234..1588259 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=359879 GTW28_RS08420 WP_003221370.1 1582889..1583338(+) (ylbF) [Bacillus subtilis strain BJQ0005]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=359879 GTW28_RS08420 WP_003221370.1 1582889..1583338(+) (ylbF) [Bacillus subtilis strain BJQ0005]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGGCGGATTATTCGTTCTTTTATTAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment