Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   I33_RS08850 Genome accession   NC_017195
Coordinates   1748851..1749282 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1743851..1754282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS08830 (I33_1884) spoVS 1744413..1744673 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  I33_RS08835 (I33_1885) tdh 1744938..1745981 (+) 1044 WP_014476841.1 L-threonine 3-dehydrogenase -
  I33_RS08840 (I33_1886) kbl 1745994..1747172 (+) 1179 WP_014476842.1 glycine C-acetyltransferase -
  I33_RS08845 miaB 1747320..1748849 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  I33_RS08850 (I33_1888) ymcA 1748851..1749282 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  I33_RS08855 (I33_1889) cotE 1749544..1750089 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  I33_RS08860 (I33_1890) hexA 1750222..1752798 (+) 2577 WP_014476844.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=35982 I33_RS08850 WP_003231834.1 1748851..1749282(+) (ymcA) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=35982 I33_RS08850 WP_003231834.1 1748851..1749282(+) (ymcA) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment