Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MS6193_RS11135 Genome accession   NZ_CP047405
Coordinates   2268761..2270188 (+) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain MS6193     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2263761..2275188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS6193_RS25210 - 2263929..2264300 (+) 372 WP_001295631.1 IS110 family transposase -
  MS6193_RS25455 (MS6193_02259) - 2264571..2264936 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  MS6193_RS11115 (MS6193_02260) tmaR 2265037..2265366 (-) 330 WP_000450409.1 DUF496 family protein -
  MS6193_RS11120 (MS6193_02261) yeeA 2265538..2266596 (-) 1059 WP_074499974.1 FUSC family protein -
  MS6193_RS11125 (MS6193_02262) sbmC 2266795..2267268 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  MS6193_RS11130 (MS6193_02263) dacD 2267386..2268552 (-) 1167 WP_001383231.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MS6193_RS11135 (MS6193_02264) sbcB 2268761..2270188 (+) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  MS6193_RS11140 (MS6193_02265) tsuB 2270231..2270458 (-) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MS6193_RS11145 (MS6193_02266) tsuA 2270472..2271530 (-) 1059 WP_000492312.1 thiosulfate utilization transporter TsuA/YeeE -
  MS6193_RS11150 (MS6193_02267) plaP 2271709..2273067 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MS6193_RS11155 yoeI 2273057..2273119 (-) 63 WP_010723108.1 membrane protein YoeI -
  MS6193_RS11160 (MS6193_02269) yeeY 2273334..2274263 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  MS6193_RS11165 (MS6193_02270) yeeZ 2274309..2275133 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=359519 MS6193_RS11135 WP_000980539.1 2268761..2270188(+) (sbcB) [Escherichia coli strain MS6193]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=359519 MS6193_RS11135 WP_000980539.1 2268761..2270188(+) (sbcB) [Escherichia coli strain MS6193]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment