Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GSY65_RS20305 Genome accession   NZ_CP047318
Coordinates   4755058..4755657 (+) Length   199 a.a.
NCBI ID   WP_055536881.1    Uniprot ID   A0ABT5G2Y0
Organism   Streptomyces sp. HM190     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4750058..4760657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY65_RS33900 - 4750564..4750922 (+) 359 Protein_4010 MarR family winged helix-turn-helix transcriptional regulator -
  GSY65_RS20290 - 4751188..4753389 (+) 2202 WP_159776191.1 serine/threonine-protein kinase -
  GSY65_RS20295 - 4753572..4754342 (-) 771 WP_159770793.1 SLATT domain-containing protein -
  GSY65_RS20300 - 4754605..4754949 (+) 345 WP_159770796.1 YbaB/EbfC family nucleoid-associated protein -
  GSY65_RS20305 recR 4755058..4755657 (+) 600 WP_055536881.1 recombination mediator RecR Machinery gene
  GSY65_RS20310 - 4755650..4756312 (+) 663 WP_159770799.1 DUF5063 domain-containing protein -
  GSY65_RS20315 - 4756436..4758796 (+) 2361 WP_159770802.1 tetratricopeptide repeat protein -
  GSY65_RS20320 - 4758824..4758979 (+) 156 WP_159770805.1 hypothetical protein -
  GSY65_RS20325 - 4759102..4760037 (+) 936 WP_159770808.1 M56 family metallopeptidase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21810.17 Da        Isoelectric Point: 4.9909

>NTDB_id=359134 GSY65_RS20305 WP_055536881.1 4755058..4755657(+) (recR) [Streptomyces sp. HM190]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCNICRDTRRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=359134 GSY65_RS20305 WP_055536881.1 4755058..4755657(+) (recR) [Streptomyces sp. HM190]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAGCCGACGGACGTACGGCGTCTCGCGCAGGCCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACACCCGCCGCGACCCGTCGGTC
ATCTGCGTCGTGGAGGAACCGAAGGACGTCGTCGCCATCGAGCGGACCCGTGAGTTCCGGGGCCGGTACCACGTCCTCGG
CGGCGCGATCAGCCCCATCGAGGGCGTCGGACCCGACGACCTGCGGATACGGGAACTTCTCGCCAGGTTGGCCGACGGCA
CGGTCACGGAGCTGATCCTGGCCACCGACCCCAACCTGGAGGGCGAGGCCACGGCCACTTATCTCGCCCGCATGATCAAA
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGATTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452