Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   E8M06_RS09175 Genome accession   NZ_CP039462
Coordinates   1859817..1861607 (-) Length   596 a.a.
NCBI ID   WP_136581540.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1854817..1866607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS09155 (E8M06_09165) - 1855624..1856526 (-) 903 WP_002942329.1 ABC transporter permease -
  E8M06_RS09160 (E8M06_09170) opp4B 1856540..1857496 (-) 957 WP_024389682.1 oligopeptide ABC transporter permease -
  E8M06_RS09165 (E8M06_09175) - 1857498..1858439 (-) 942 WP_029694475.1 ATP-binding cassette domain-containing protein -
  E8M06_RS09170 (E8M06_09180) - 1858442..1859440 (-) 999 WP_136581539.1 ABC transporter ATP-binding protein -
  E8M06_RS09175 (E8M06_09185) oppA 1859817..1861607 (-) 1791 WP_136581540.1 oligopeptide ABC transporter substrate-binding protein Regulator
  E8M06_RS09180 (E8M06_09190) pbp3 1861820..1863061 (+) 1242 WP_136581541.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  E8M06_RS09185 (E8M06_09195) sufB 1863437..1864852 (-) 1416 WP_044675921.1 Fe-S cluster assembly protein SufB -
  E8M06_RS09190 (E8M06_09200) sufU 1864995..1865435 (-) 441 WP_044675923.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65721.39 Da        Isoelectric Point: 4.3934

>NTDB_id=358864 E8M06_RS09175 WP_136581540.1 1859817..1861607(-) (oppA) [Streptococcus suis strain WUSS351]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPTEVKQDGTTVSDAQLKYAFVSPTTSSGLLIDELTENTTDST
FGGMVDISLFGYDGDRKLDDSGLAKAEFDVEGKKITVSLTGKDYKWSDGQPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IEGMQEFVDGKASDISGIKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNLGKYDESAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYSYDPEKAKK
LLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEINTFYEAVQANDPAID
MYAGGWSTGYDPNPTGTWGPIAAFNMSRFVSDENTKLLDAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITA
LNKRVKNYDSNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=358864 E8M06_RS09175 WP_136581540.1 1859817..1861607(-) (oppA) [Streptococcus suis strain WUSS351]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTTCCAACTGAGGTAAAACAAGACGGAACAACAGTGTCTGACGCTCAGT
TGAAATATGCGTTTGTATCACCAACGACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCAACA
TTTGGTGGAATGGTTGATATTTCACTGTTCGGTTACGATGGAGATCGTAAGTTGGATGATTCTGGTCTTGCTAAAGCTGA
ATTTGATGTAGAAGGTAAGAAAATCACAGTTAGCTTGACTGGTAAGGACTACAAGTGGTCGGATGGTCAACCATTCACAA
TCAACGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGATTATACAGGTGTTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGCAAGAATTTGTTGACGGTAAAGCATCAGACATCTCAGGTATCAAGAAAATCGATGATTATACAGTTGA
ATTGACTGTAAAAGAAATGTCACCTTCTATGATGTATGCGGGTGGTGATGTCCCAGCCTATATCCAACCAGAACATATCT
ATAAAGATATCCCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAACAAG
TTCATTGAAGATTGACATCGTATCACCAGATACAATCGTTTCTGAGATGAAAGCTGGTAACTATGACATCGCAGATATGC
CAGTTGATCAGTTGGATTCTTATAAAGATGCATCTAACTTGAATATCGTTGGTTCTTTGGATTCAGCTTATGAATATATT
TCATTCAACCTTGGTAAATATGACGAGTCTGCTGGCAAGAACGTTATGGATGAGAACGCTAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAACT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGAAGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGTAAAGACGGTAAGGAATTTAAGATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAGTACATTGCTTGGTGGAAAGAAGTCGGCTTGA
ACGTTGAATTGTACACAGGCCGTACAGTTGAAATCAATACATTCTACGAAGCTGTTCAAGCAAATGATCCTGCTATCGAT
ATGTACGCTGGTGGTTGGTCAACAGGTTATGATCCAAACCCAACAGGTACTTGGGGTCCTATCGCTGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAACACTAAATTGTTGGACGCAATTAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCAATTCCTACATTTGAGTCTGAGTCAATTACTGCC
CTTAACAAACGCGTGAAAAACTATGATTCTAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

92.953

100

0.93

Multiple sequence alignment