Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E8M06_RS10245 Genome accession   NZ_CP039462
Coordinates   2101688..2103055 (-) Length   455 a.a.
NCBI ID   WP_024393368.1    Uniprot ID   A0A0Z8DEI8
Organism   Streptococcus suis strain WUSS351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2096688..2108055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS11550 - 2099730..2099831 (-) 102 Protein_1942 KxYKxGKxW signal peptide domain-containing protein -
  E8M06_RS10235 (E8M06_10245) - 2100104..2100862 (-) 759 WP_013730631.1 TIGR00266 family protein -
  E8M06_RS10240 (E8M06_10250) - 2101070..2101564 (-) 495 WP_105120287.1 carbonic anhydrase -
  E8M06_RS10245 (E8M06_10255) radA 2101688..2103055 (-) 1368 WP_024393368.1 DNA repair protein RadA Machinery gene
  E8M06_RS10250 (E8M06_10260) - 2103062..2103595 (-) 534 WP_105153972.1 histidine phosphatase family protein -
  E8M06_RS10255 (E8M06_10265) - 2103601..2104044 (-) 444 WP_105115291.1 dUTP diphosphatase -
  E8M06_RS10260 (E8M06_10270) - 2104063..2105049 (-) 987 WP_136581622.1 virulence RhuM family protein -
  E8M06_RS10265 (E8M06_10275) - 2105385..2106251 (-) 867 WP_024411146.1 helix-turn-helix transcriptional regulator -
  E8M06_RS10270 (E8M06_10280) - 2106660..2107049 (+) 390 WP_024411147.1 hypothetical protein -
  E8M06_RS10275 (E8M06_10285) - 2107186..2107953 (+) 768 WP_136581623.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49859.33 Da        Isoelectric Point: 6.1911

>NTDB_id=358868 E8M06_RS10245 WP_024393368.1 2101688..2103055(-) (radA) [Streptococcus suis strain WUSS351]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=358868 E8M06_RS10245 WP_024393368.1 2101688..2103055(-) (radA) [Streptococcus suis strain WUSS351]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGTCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTTAAGAACGAGCGGGTTAGTCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGCTCGCACTAAGACCAATATGGAGGAGTTCAAC
CGTGTCCTCGGTGGCGGTGTGGTGCCTGGCAGTTTGGTCCTGATTGGAGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCGACCCAACTTTCGACTATTGGCACCGTCCTCTACGTGTCGGGGGAGGAGTCTGCCCAGCAGATTAAGT
TGCGAGCGGAGCGTCTGGGCGACATCGACAGCGAGTTCTATCTCTATGCCGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTAACCAATGAACTTATGCAGATTGCCAAGACCAACAACATTGCAACCTTTATCGTCG
GCCACATGACCAAGGAGGGAACCCTGGCTGGACCGCGGACCCTGGAGCACATGGTGGACACCGTTCTCTATTTTGAGGGC
GAGCGACAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGTTTTGGCTCTACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGTTTGGTCGAAGTCCTCAATCCTAGCGAGGTCTTTCTAGAAGAGCGTCTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCAGAAGTGCAGGCCCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCTAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCGGCAGGTGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTATAAGGATAAGCCTACCAACCCACAAGAGTGCTTTATAGGCGAAATTGGTCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCTCTGACCGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTGT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8DEI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624

Multiple sequence alignment