Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   E8M06_RS07570 Genome accession   NZ_CP039462
Coordinates   1535085..1535888 (-) Length   267 a.a.
NCBI ID   WP_024399908.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1530085..1540888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS07555 (E8M06_07565) recR 1530676..1531272 (-) 597 WP_024399909.1 recombination mediator RecR -
  E8M06_RS07560 (E8M06_07570) pbp2b 1531281..1533350 (-) 2070 WP_136581443.1 penicillin-binding protein PBP2B -
  E8M06_RS07565 (E8M06_07575) vga(F) 1533442..1534827 (-) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  E8M06_RS07570 (E8M06_07580) vicX 1535085..1535888 (-) 804 WP_024399908.1 MBL fold metallo-hydrolase Regulator
  E8M06_RS07575 (E8M06_07585) micB 1535895..1537244 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  E8M06_RS07580 (E8M06_07590) micA 1537237..1537941 (-) 705 WP_002935840.1 response regulator YycF Regulator
  E8M06_RS07585 (E8M06_07595) - 1538135..1538896 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  E8M06_RS07590 (E8M06_07600) - 1538907..1539746 (+) 840 WP_136581444.1 transporter substrate-binding domain-containing protein -
  E8M06_RS07595 (E8M06_07605) - 1539761..1540459 (+) 699 WP_004298848.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29689.78 Da        Isoelectric Point: 5.7755

>NTDB_id=358853 E8M06_RS07570 WP_024399908.1 1535085..1535888(-) (vicX) [Streptococcus suis strain WUSS351]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
TQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=358853 E8M06_RS07570 WP_024399908.1 1535085..1535888(-) (vicX) [Streptococcus suis strain WUSS351]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGTGTCAGTCATGATGCGGCCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCATATTCATGGAATTTGAA
GCAACGGATTTTGTCAGATAAGGGCCACCTTTGTAACGAAGACGGTGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CAAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
ACTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772

Multiple sequence alignment