Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   E8M06_RS05545 Genome accession   NZ_CP039462
Coordinates   1099538..1100764 (-) Length   408 a.a.
NCBI ID   WP_029171791.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094538..1105764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS05520 (E8M06_05525) - 1094711..1096024 (-) 1314 WP_105119913.1 excalibur calcium-binding domain-containing protein -
  E8M06_RS05525 (E8M06_05530) - 1096159..1096341 (+) 183 WP_044762151.1 4-oxalocrotonate tautomerase -
  E8M06_RS05530 (E8M06_05535) lepA 1096391..1098223 (-) 1833 WP_105119914.1 translation elongation factor 4 -
  E8M06_RS05535 (E8M06_05540) ndk 1098461..1098874 (-) 414 WP_105153027.1 nucleoside-diphosphate kinase -
  E8M06_RS05540 (E8M06_05545) yihA 1098897..1099484 (-) 588 WP_014638915.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  E8M06_RS05545 (E8M06_05550) clpX 1099538..1100764 (-) 1227 WP_029171791.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  E8M06_RS05555 (E8M06_05560) - 1100962..1101474 (-) 513 WP_136581303.1 dihydrofolate reductase -
  E8M06_RS05560 (E8M06_05565) - 1101649..1102488 (-) 840 WP_029171793.1 thymidylate synthase -
  E8M06_RS05565 (E8M06_05570) - 1102540..1102842 (-) 303 WP_029171794.1 hypothetical protein -
  E8M06_RS05570 (E8M06_05575) - 1102854..1103132 (-) 279 WP_002934968.1 hypothetical protein -
  E8M06_RS05575 (E8M06_05580) - 1103258..1104217 (-) 960 WP_029171795.1 ROK family glucokinase -
  E8M06_RS05580 (E8M06_05585) - 1104313..1104648 (-) 336 WP_136581304.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45309.83 Da        Isoelectric Point: 4.5987

>NTDB_id=358846 E8M06_RS05545 WP_029171791.1 1099538..1100764(-) (clpX) [Streptococcus suis strain WUSS351]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=358846 E8M06_RS05545 WP_029171791.1 1099538..1100764(-) (clpX) [Streptococcus suis strain WUSS351]
ATGGCTGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
TGGAAACAATGTCTTCATTTGTAATGAATGCGTGGAACTAGCACAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTGGCCGATACGCCAAAGCCACAAGAATTACTCAATATCCTGAACAACTATGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTACAAACGTATCAATTTCCAGGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAGTCAAATATCCTTATGATTGGTCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAAGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAGATGATTCATGTCGATACCAAAAAC
ATCCTCTTCATCGTAGGCGGTGCCTTTGATGGTATTGAGGAGATTGTCAAACAGCGACTTGGTGAGAAAATCATCGGTTT
TGGTCAAAACAATCGTGCCATTGATGAAAAAGAATCCTACATGCAACATATCATTGCAGATGATATTCAAAAATTCGGTA
TTATTCCAGAGTTGATTGGTCGCTTGCCTGTATTTGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGTATTTTG
ACGGAACCAAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGCGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGCCAAGATAACGTTAAACGTGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAA
GAAAAGCCTTTACTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.374

100

0.836
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574

Multiple sequence alignment