Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   E8M03_RS02685 Genome accession   NZ_CP039448
Coordinates   569893..570462 (+) Length   189 a.a.
NCBI ID   WP_000872872.1    Uniprot ID   A0AB73JJN0
Organism   Staphylococcus aureus strain VGC1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 564893..575462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M03_RS02660 (E8M03_02705) cysE 566106..566753 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  E8M03_RS02665 (E8M03_02710) cysS 566737..568137 (+) 1401 WP_000631977.1 cysteine--tRNA ligase -
  E8M03_RS02670 (E8M03_02715) - 568130..568534 (+) 405 WP_000370186.1 Mini-ribonuclease 3 -
  E8M03_RS02675 (E8M03_02720) rlmB 568542..569288 (+) 747 WP_000390339.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E8M03_RS02680 (E8M03_02725) - 569288..569812 (+) 525 WP_000664738.1 NYN domain-containing protein -
  E8M03_RS02685 (E8M03_02730) sigH 569893..570462 (+) 570 WP_000872872.1 sigma-70 family RNA polymerase sigma factor Regulator
  E8M03_RS02690 (E8M03_02735) rpmG 570577..570720 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  E8M03_RS02695 (E8M03_02740) secE 570776..570958 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  E8M03_RS02700 (E8M03_02745) nusG 570971..571519 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  E8M03_RS02705 (E8M03_02750) rplK 571700..572122 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  E8M03_RS02710 (E8M03_02755) rplA 572330..573022 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  E8M03_RS02720 (E8M03_02765) rplJ 573294..573794 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  E8M03_RS02725 (E8M03_02770) rplL 573837..574205 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  E8M03_RS02730 (E8M03_02775) - 574380..574988 (+) 609 WP_000020296.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=358654 E8M03_RS02685 WP_000872872.1 569893..570462(+) (sigH) [Staphylococcus aureus strain VGC1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=358654 E8M03_RS02685 WP_000872872.1 569893..570462(+) (sigH) [Staphylococcus aureus strain VGC1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment