Detailed information NTG0358517

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: GRI05_RS10335
• Genome accession: NZ_CP047248
• Coordinates: 2101648..2102742 (+)
• Length: 364 a.a.
• NCBI ID: WP_012028050.1
• Uniprot ID: A0A0H3N2H6
• Organism: Streptococcus suis strain LSM178
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2096648..2107742

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRI05_RS10310 (GRI05_10555)	pgsA	2097167..2097706 (-)	540	WP_012028045.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
GRI05_RS10315 (GRI05_10560)	rodZ	2097716..2098573 (-)	858	WP_012028600.1	cytoskeleton protein RodZ	-
GRI05_RS10320 (GRI05_10565)	yfmH	2098655..2099938 (-)	1284	WP_012775413.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
GRI05_RS10325 (GRI05_10570)	yfmF	2099935..2101188 (-)	1254	WP_012028048.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
GRI05_RS10330 (GRI05_10575)	yaaA	2101262..2101645 (+)	384	WP_012028049.1	S4 domain-containing protein YaaA	-
GRI05_RS10335 (GRI05_10580)	recF	2101648..2102742 (+)	1095	WP_012028050.1	DNA replication/repair protein RecF	Machinery gene
GRI05_RS10340 (GRI05_10585)	guaB	2103014..2104495 (-)	1482	WP_012028051.1	IMP dehydrogenase	-
GRI05_RS10345 (GRI05_10590)	trpS	2104727..2105752 (-)	1026	WP_012775414.1	tryptophan--tRNA ligase	-
GRI05_RS10350 (GRI05_10595)	-	2106107..2106979 (+)	873	WP_012775460.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42188.24 Da
• Isoelectric Point: 6.9173

>NTDB_id=358517 GRI05_RS10335 WP_012028050.1 2101648..2102742(+) (recF) [Streptococcus suis strain LSM178]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=358517 GRI05_RS10335 WP_012028050.1 2101648..2102742(+) (recF) [Streptococcus suis strain LSM178]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: A0A0H3N2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.36	99.176	0.698
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442