Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GRI05_RS05065 Genome accession   NZ_CP047248
Coordinates   1024206..1024871 (+) Length   221 a.a.
NCBI ID   WP_012775103.1    Uniprot ID   A0A0H3MVW7
Organism   Streptococcus suis strain LSM178     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019206..1029871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRI05_RS05035 (GRI05_05160) - 1019242..1019988 (+) 747 WP_011922411.1 ABC transporter permease -
  GRI05_RS05040 (GRI05_05165) - 1019990..1020724 (+) 735 WP_011922410.1 ABC transporter permease -
  GRI05_RS05045 (GRI05_05170) - 1020860..1021612 (+) 753 WP_011922409.1 ABC transporter ATP-binding protein -
  GRI05_RS05050 (GRI05_05175) - 1021613..1023583 (+) 1971 WP_012775105.1 ABC transporter permease -
  GRI05_RS05055 (GRI05_05180) relB 1023675..1023926 (+) 252 WP_012775104.1 type II toxin-antitoxin system RelB family antitoxin -
  GRI05_RS05060 (GRI05_05185) - 1023910..1024167 (+) 258 WP_011922404.1 type II toxin-antitoxin system RelE family toxin -
  GRI05_RS05065 (GRI05_05190) braR 1024206..1024871 (+) 666 WP_012775103.1 response regulator transcription factor Regulator
  GRI05_RS05070 (GRI05_05195) - 1024868..1025809 (+) 942 WP_012775102.1 sensor histidine kinase -
  GRI05_RS05075 (GRI05_05200) - 1025885..1027393 (+) 1509 WP_011922400.1 phosphomannomutase/phosphoglucomutase -
  GRI05_RS05080 (GRI05_05205) xerS 1027463..1028533 (-) 1071 WP_043029021.1 tyrosine recombinase XerS Machinery gene
  GRI05_RS05085 (GRI05_05210) - 1028892..1029506 (-) 615 Protein_958 Abi family protein -
  GRI05_RS10545 (GRI05_05215) - 1029565..1029855 (-) 291 WP_238714605.1 Abi family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25460.22 Da        Isoelectric Point: 4.7792

>NTDB_id=358480 GRI05_RS05065 WP_012775103.1 1024206..1024871(+) (braR) [Streptococcus suis strain LSM178]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDINLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSSELSIDQFQLSLDGRFSNESEQVQLSPTETKILS
ALLERQGQIVSKDELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLIK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=358480 GRI05_RS05065 WP_012775103.1 1024206..1024871(+) (braR) [Streptococcus suis strain LSM178]
ATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAACTCTTGAAGCAGCATTTGGGAAAATCTTA
TCAGGTAGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTTGCGGAAATCAAACCAGACTTAGTGCTGATGGACA
TTAACTTGCCCTATTACAACGGTTTTTATTGGACGACAGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATCTCT
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTCTCCAAGCCATTTTCTCTAGG
AATTTTGGATGCCAAAATCGGAGCCTTCCTGCGTCGGGTTAATCAATTCAGCAAATCGAGCGAATTGTCTATCGATCAGT
TCCAGCTTAGTTTGGACGGGCGATTTTCAAACGAATCGGAACAGGTTCAGCTTTCACCTACTGAAACCAAGATTTTATCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGATGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTATCGA
CCAGAATACGCTCAATGTAAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACCGTTC
GTGGCGTGGGGTACTTGATCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MVW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.248

98.643

0.466