Detailed information NTG0358383

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: GRT08_RS13265
• Genome accession: NZ_CP047234
• Coordinates: 2705111..2706373 (-)
• Length: 420 a.a.
• NCBI ID: WP_003152620.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain FJ4
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2700111..2711373

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRT08_RS13250 (GRT08_13060)	yihA	2700193..2700780 (-)	588	WP_003152626.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
GRT08_RS13255 (GRT08_13065)	lon	2700777..2703101 (-)	2325	WP_107994284.1	endopeptidase La	-
GRT08_RS13260 (GRT08_13070)	lonB	2703302..2704960 (-)	1659	WP_003152622.1	ATP-dependent protease LonB	-
GRT08_RS13265 (GRT08_13075)	clpX	2705111..2706373 (-)	1263	WP_003152620.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
GRT08_RS13270 (GRT08_13080)	tig	2706645..2707919 (-)	1275	WP_003152618.1	trigger factor	-
GRT08_RS13275 (GRT08_13085)	ddcA	2708136..2709140 (-)	1005	WP_377802757.1	DNA damage checkpoint antagonist DdcA	-
GRT08_RS13280 (GRT08_13090)	leuD	2709259..2709858 (-)	600	WP_007408146.1	3-isopropylmalate dehydratase small subunit	-
GRT08_RS13285 (GRT08_13095)	leuC	2709874..2711292 (-)	1419	WP_003152606.1	3-isopropylmalate dehydratase large subunit	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46188.97 Da
• Isoelectric Point: 4.5163

>NTDB_id=358383 GRT08_RS13265 WP_003152620.1 2705111..2706373(-) (clpX) [Bacillus amyloliquefaciens strain FJ4]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKAADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELEFEGEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVGQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=358383 GRT08_RS13265 WP_003152620.1 2705111..2706373(-) (clpX) [Bacillus amyloliquefaciens strain FJ4]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTGAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGTATTGAGCTCTGTACAGAAATCGTAGAGGAAGAGCTTGGTACAGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAATTCCAACAGTAAAGTGGATGATGTTGAGCT
TTCTAAAAGTAATATTTCTTTAATCGGACCGACTGGAAGCGGGAAAACACTTCTTGCCCAGACGCTTGCGCGTATTCTGA
ACGTTCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTAGAAAACATCCTCCTC
AAGCTGATTCAGGCAGCAGACTATGATGTGGAAAAAGCAGAAAAAGGCATTATTTATATCGATGAAATCGATAAAGTAGC
GCGGAAATCTGAAAACCCGTCCATTACACGCGACGTATCAGGCGAAGGCGTTCAGCAGGCGCTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGACGTAAACATCCTCATCAGGAATTCATCCAGATCGATACGACGAACATT
CTGTTCATTTGCGGCGGTGCATTTGACGGCATTGAACAAATCATCAAACGCCGTCTCGGACAAAAAGTCATCGGCTTCGG
CTCAGATAATAAAGCGGCAGACCTGGAAAAAGAAGAACTGCTTTCTAAAGTTCTCCCGGAAGACCTGCTCCGTTTCGGTC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCGAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTTGATGATGTCGAGCTTGAATTTGAAGGCGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGTAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAAGGCATCA
TGCTTGACGTCATGTTTGATCTGCCGTCCCGCGATGATATTGAAAAATGTGTCATTACCGGAGCGACAGTCGCAGACGGT
GAAGCGCCGCGTCTTGTATTAAAAGACGGCACTGTTGTCGGCCAAGATAAAACATCAGCATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.262	94.524	0.645
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.19	0.569