Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   GRT08_RS09095 Genome accession   NZ_CP047234
Coordinates   1847858..1848478 (-) Length   206 a.a.
NCBI ID   WP_003154004.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1842858..1853478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS09065 (GRT08_08945) - 1843865..1844299 (+) 435 WP_003154017.1 dUTP diphosphatase -
  GRT08_RS09070 (GRT08_08950) - 1844575..1845396 (+) 822 WP_094246900.1 poly-gamma-glutamate hydrolase family protein -
  GRT08_RS09075 - 1845505..1845654 (+) 150 WP_166706258.1 hypothetical protein -
  GRT08_RS09080 (GRT08_08955) - 1845641..1846471 (+) 831 WP_003154011.1 prohibitin family protein -
  GRT08_RS09085 (GRT08_08960) - 1846499..1846948 (-) 450 WP_198863735.1 YndM family protein -
  GRT08_RS09090 (GRT08_08965) - 1847090..1847518 (+) 429 WP_071391780.1 hypothetical protein -
  GRT08_RS09095 (GRT08_08970) dinR/lexA 1847858..1848478 (-) 621 WP_003154004.1 transcriptional repressor LexA Regulator
  GRT08_RS09100 (GRT08_08975) yneA 1848635..1848946 (+) 312 WP_071391779.1 cell division suppressor protein YneA -
  GRT08_RS09105 (GRT08_08980) - 1848962..1849612 (+) 651 WP_003153998.1 recombinase family protein -
  GRT08_RS09110 (GRT08_08985) - 1849681..1849914 (+) 234 WP_003153997.1 DUF896 domain-containing protein -
  GRT08_RS09115 (GRT08_08990) recP/tkt 1850081..1852084 (+) 2004 WP_007611727.1 transketolase Machinery gene
  GRT08_RS09120 (GRT08_08995) sirA 1852236..1852682 (+) 447 WP_101563056.1 sporulation inhibitor of replication protein SirA -
  GRT08_RS09125 (GRT08_09000) - 1852768..1852986 (+) 219 WP_003153994.1 YneF family protein -
  GRT08_RS09130 (GRT08_09005) - 1853060..1853233 (-) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23055.65 Da        Isoelectric Point: 5.3816

>NTDB_id=358351 GRT08_RS09095 WP_003154004.1 1847858..1848478(-) (dinR/lexA) [Bacillus amyloliquefaciens strain FJ4]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVHIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=358351 GRT08_RS09095 WP_003154004.1 1847858..1848478(-) (dinR/lexA) [Bacillus amyloliquefaciens strain FJ4]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCTACTAAACCGAGGGCGATTGAGGTATTGGATGAAGAAGAAGTCCATATTCCGAAAAGCCAG
GTCGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAAAGTATGATTGACGCCGGCA
TTTTTGACAAAGATTACGTCATTGTCAAACAGCAGAACACGGCCAATAACGGAGAAATCGTCGTAGCAATGACCGAAGAT
GATGAAGCGACGGTTAAGCGCTTCTATAAAGAAGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAATGTAAGCATTTTGGGGAAAGTGATCGGCGTATTCAGAGCCGTCCATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927

Multiple sequence alignment