Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   GRT08_RS05380 Genome accession   NZ_CP047234
Coordinates   1033755..1037147 (+) Length   1130 a.a.
NCBI ID   WP_377803074.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1028755..1042147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS05370 (GRT08_05325) addA 1028817..1032521 (+) 3705 WP_377803168.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  GRT08_RS05375 (GRT08_05330) sbcD 1032586..1033758 (+) 1173 WP_039062865.1 exonuclease subunit SbcD -
  GRT08_RS05380 (GRT08_05335) sbcC 1033755..1037147 (+) 3393 WP_377803074.1 exonuclease subunit SbcC Machinery gene
  GRT08_RS05385 (GRT08_05340) - 1037163..1037456 (+) 294 WP_007610512.1 hypothetical protein -
  GRT08_RS05390 (GRT08_05345) - 1037500..1037718 (-) 219 WP_003155143.1 spore germination protein -
  GRT08_RS05395 (GRT08_05350) - 1037758..1038153 (-) 396 WP_039062867.1 spore germination protein GerPE -
  GRT08_RS05400 (GRT08_05355) - 1038153..1038329 (-) 177 WP_003155141.1 hypothetical protein -
  GRT08_RS05405 (GRT08_05360) - 1038326..1038943 (-) 618 WP_003155139.1 spore germination protein GerPC -
  GRT08_RS05410 (GRT08_05365) - 1038979..1039215 (-) 237 WP_007409164.1 spore germination protein GerPB -
  GRT08_RS05415 (GRT08_05370) - 1039228..1039449 (-) 222 WP_003155135.1 spore germination protein -
  GRT08_RS05420 (GRT08_05375) - 1039639..1039854 (-) 216 WP_377803075.1 aspartyl-phosphate phosphatase Spo0E family protein -
  GRT08_RS05425 (GRT08_05380) - 1040072..1040977 (+) 906 WP_031378473.1 fumarylacetoacetate hydrolase family protein -
  GRT08_RS05430 (GRT08_05385) - 1041071..1041427 (+) 357 WP_007409161.1 YisL family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128198.38 Da        Isoelectric Point: 5.7299

>NTDB_id=358316 GRT08_RS05380 WP_377803074.1 1033755..1037147(+) (sbcC) [Bacillus amyloliquefaciens strain FJ4]
MKPILLTIKGLHSFREEQTIDFAGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKDEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEDALKQAEQQFHEANERLEAAEKKRVRAK
ERFENHQEIWNLQTERDEYERREKKLEERRPYITDLTERLKEAETALALEPYADRCTEAVRRKRRAEQEHELAKRKSEAE
TVSFTRQNEAYEAWRAHKAEQEPKLVKEEELYQRLSAIEQKLLEAKKEAEKTNAEHSKKEEEYEAASKQLAAVKDRLTRG
QNRQNELKEELKAVQVTADERKKCQTAAQLAAGFQQTQEQITKERANLTTQLKNVEKLNGESESLTAKAKTEEEDITRAY
QTLQTVYHMVCETERSLKAAAERAEKTQADLRRRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRPRSAHETFSPDTA
VQEHLQQVEALLSEAAALSQEVLTAKVALEEQSGRFTEECPFLQSARVPELEAASSISGRPLDEAFSAVRLEWKQMKQDM
LSVKEKVTRLISAHQQTVKQAEQLAERIRYEEKEVGRLRHSLEELESLSESRLNQYNEVCGDIPPNRIDAWQASIDEKDR
QAEECEKRIETSIAFLKEHEEEKERLQEMKHRLERERLELHYASERLQQVIDGYEQELGTAAEETSISAKLEAVRQELQL
LKSKEQSLFDALKQAQQSLNDAKGRESGSLMSLRDAETSLEKAQNDWRVRSKDTGFAEPDQVKKSLLPQGRAEEMKKEID
EFLDTSKQLSANISRVTDKLAERRISEEEWTASVSLLKQAEAELGAAMEEKGAQAKAFAVMQKQHKRFKEIEAELKSWQT
QIDRLDKLQSVCKGNTFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTLEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=358316 GRT08_RS05380 WP_377803074.1 1033755..1037147(+) (sbcC) [Bacillus amyloliquefaciens strain FJ4]
ATGAAGCCGATTCTGTTAACGATAAAAGGGCTCCACAGCTTCAGGGAGGAACAGACCATTGATTTTGCCGGACTGTCCGG
AGCCGGGGTGTTCGGAATTTTCGGGCCGACCGGAAGCGGAAAATCATCGATCCTTGATGCCATGACACTCGCTTTATACG
GAAAAGTGGAGCGCGCCGCAAATAATACGCACGGCATCTTGAATCATGCCGAAGATCAGCTCGCCGTCTCATTTACATTC
GCGCTTCAATCCGGCCACCGGGTTTCCTACAAGGTCGAGCGCGTTTTTAAGAGAACGGATGAAACGAAAGTAAAAACCGC
CCTCTGCCGCCTGATTGAAATCAAAGACGAACAAACGGTGCTGGCCGATAAAGCGAATGAAGTGAACAAAAAGGTAGAGG
AGCTTCTTGGCCTGACCATTGACGACTTTACAAGAGCCGTCGTGCTGCCGCAAGGAAAGTTTGCCGAGTTTCTGTCGCTT
AAAGGCGCGGAAAGAAGACATATGCTCCAGCGCCTGTTTAATCTGGAACAGTACGGGGACAGGCTTGTCAAAAAATTGCG
GCGGCGGGCGCAGGAAGCGGCAGCGAAAAAAAATGAAATGCTGGCCGAACAATCCGGCCTCGGAGACGCAGGAGAAGATG
CGCTGAAGCAGGCTGAACAGCAGTTTCACGAAGCGAACGAACGGCTTGAAGCAGCTGAGAAGAAACGGGTCCGGGCAAAA
GAGCGTTTTGAAAATCACCAGGAAATTTGGAACTTGCAGACAGAAAGAGATGAATATGAGCGCCGGGAGAAAAAGCTTGA
GGAAAGACGCCCGTACATCACGGATTTGACTGAGCGTCTTAAAGAGGCGGAAACAGCTCTCGCCCTTGAGCCGTACGCAG
ACCGCTGCACAGAAGCCGTCCGCCGGAAGCGGCGCGCCGAACAGGAACACGAACTGGCCAAACGGAAATCAGAGGCGGAA
ACCGTTTCATTTACCCGGCAAAATGAAGCCTATGAAGCATGGCGGGCCCATAAGGCCGAACAGGAGCCGAAGCTTGTCAA
GGAAGAAGAGCTGTATCAAAGACTTTCAGCCATTGAACAAAAACTGCTTGAAGCGAAAAAAGAAGCGGAAAAAACAAATG
CGGAGCACAGCAAAAAAGAGGAAGAATACGAAGCCGCCTCGAAACAGCTGGCCGCAGTGAAAGACCGCCTGACCCGCGGC
CAAAACAGGCAGAATGAGCTGAAAGAAGAGCTGAAAGCAGTTCAAGTGACCGCCGATGAACGGAAAAAATGCCAGACCGC
AGCACAGCTGGCGGCAGGCTTTCAGCAGACACAGGAACAAATCACGAAAGAGCGGGCCAATCTGACAACGCAGCTGAAAA
ACGTGGAGAAGCTCAACGGAGAAAGCGAGTCGCTCACAGCGAAAGCGAAAACGGAAGAGGAAGACATTACGCGCGCTTAT
CAAACGCTGCAAACCGTTTACCATATGGTCTGTGAAACGGAACGTTCACTGAAAGCCGCAGCCGAACGGGCTGAAAAAAC
GCAAGCCGATCTCCGCAGGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCGGAAAAACTGATCGAAG
GAAAGCCTTGTCCTGTATGCGGCTCGACGCAGCATGACCGCCCGCGTTCCGCTCATGAAACATTCTCGCCTGATACGGCT
GTGCAGGAACATTTGCAGCAGGTGGAAGCACTGCTTTCTGAGGCGGCGGCTCTTTCTCAGGAAGTGCTGACAGCCAAGGT
TGCATTAGAAGAACAGTCGGGGCGTTTTACCGAAGAATGTCCGTTTCTGCAAAGCGCCCGGGTTCCGGAGCTGGAAGCCG
CTTCTTCCATCAGCGGACGCCCGCTTGATGAAGCGTTCAGCGCCGTCCGCTTGGAATGGAAACAAATGAAACAGGATATG
CTGTCGGTAAAAGAGAAGGTCACAAGACTGATCAGCGCGCATCAGCAGACGGTGAAACAAGCTGAGCAGCTTGCCGAACG
AATCCGCTACGAGGAAAAAGAAGTCGGCCGTCTCAGACATTCATTAGAAGAGCTTGAATCGCTGTCAGAAAGCCGATTGA
ATCAGTACAATGAAGTCTGCGGTGATATTCCGCCAAACCGGATTGACGCCTGGCAGGCTTCGATAGATGAGAAGGACAGG
CAGGCAGAAGAATGTGAGAAGCGCATTGAAACAAGCATCGCATTCCTCAAGGAACATGAAGAGGAGAAAGAACGCCTGCA
GGAGATGAAGCATCGGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCTGAGCGCCTGCAGCAGGTGATTGACGGAT
ATGAACAAGAGCTCGGAACAGCAGCCGAAGAAACATCAATTTCCGCAAAGCTTGAAGCGGTGCGGCAGGAATTACAGCTG
TTAAAATCCAAAGAACAGTCCCTATTCGACGCGCTGAAGCAGGCGCAGCAATCACTGAATGACGCAAAAGGCCGGGAATC
CGGGAGTCTCATGTCACTCAGGGATGCTGAGACCTCCCTTGAGAAAGCGCAAAACGACTGGCGCGTGAGGTCAAAAGACA
CCGGGTTTGCCGAGCCGGACCAAGTCAAAAAAAGTCTGCTTCCGCAAGGGCGTGCAGAGGAAATGAAAAAAGAAATTGAT
GAGTTCCTGGACACCTCAAAACAGCTATCGGCAAATATCAGCCGTGTTACTGATAAATTAGCCGAGCGCCGGATATCGGA
GGAAGAATGGACAGCATCCGTTTCTCTGCTGAAGCAGGCAGAGGCTGAGTTAGGGGCCGCCATGGAGGAAAAAGGAGCAC
AGGCAAAAGCCTTCGCGGTTATGCAAAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAGCTGGCAGACA
CAGATTGACAGGCTTGATAAGCTCCAGTCTGTATGTAAAGGCAATACATTCGTCGAATTTTTAGCGGAAGAACAGCTGGA
AAGCGTGGCTCGGGACGCCTCTGCCCGTCTCGGAGCGCTGACAAGGCAGCGATATGCCATATTAGTCGATTCAGAAGGCG
GTTTCGTCATGCGTGATGACGCGAACGGAGGCGTCAAACGGCCCGTATCAAGCCTTTCCGGCGGGGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCCTTGTCCGCCCAGATTCAGCTGAGGGGGCAATACCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGGACTCTTGACCAAGGGCTCTTAGACACCGTTGTCACAGCGCTCGAAAAGCTGCAATCGGACAACTTATCCG
TCGGAGTGATCAGCCATGTGCAGGAGCTGAGAGCGCGTCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGG
AAAGGCACCCGGGTCACATTGGAGATCATGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(6-267)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.229

100

0.645

Multiple sequence alignment