Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   SB21_RS01995 Genome accession   NZ_CP039380
Coordinates   392936..393055 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain LPL-K103     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 387936..398055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB21_RS01980 (SB21_01980) - 389549..390231 (+) 683 Protein_349 response regulator transcription factor -
  SB21_RS01985 (SB21_01985) - 390218..391651 (+) 1434 WP_020953885.1 ATP-binding protein -
  SB21_RS01990 (SB21_01990) rapC 391804..392952 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  SB21_RS01995 (SB21_01995) phrC 392936..393055 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  SB21_RS02000 (SB21_02000) - 393203..393298 (-) 96 WP_021495118.1 YjcZ family sporulation protein -
  SB21_RS02005 (SB21_02005) - 393393..394757 (-) 1365 WP_020955323.1 aspartate kinase -
  SB21_RS02010 (SB21_02010) ceuB 395171..396124 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  SB21_RS02015 (SB21_02015) - 396114..397061 (+) 948 WP_039062612.1 iron chelate uptake ABC transporter family permease subunit -
  SB21_RS02020 (SB21_02020) - 397055..397813 (+) 759 WP_039062614.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=358316 SB21_RS01995 WP_003156334.1 392936..393055(+) (phrC) [Bacillus velezensis strain LPL-K103]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=358316 SB21_RS01995 WP_003156334.1 392936..393055(+) (phrC) [Bacillus velezensis strain LPL-K103]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718

Multiple sequence alignment