Detailed information NTG0358315

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: SB21_RS01990
• Genome accession: NZ_CP039380
• Coordinates: 391804..392952 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain LPL-K103
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 386804..397952

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SB21_RS01970 (SB21_01970)	-	387202..387885 (-)	684	WP_039062608.1	ABC transporter ATP-binding protein	-
SB21_RS01975 (SB21_01975)	-	387900..389336 (-)	1437	WP_039062609.1	ABC transporter permease	-
SB21_RS01980 (SB21_01980)	-	389549..390231 (+)	683	Protein_349	response regulator transcription factor	-
SB21_RS01985 (SB21_01985)	-	390218..391651 (+)	1434	WP_020953885.1	ATP-binding protein	-
SB21_RS01990 (SB21_01990)	rapC	391804..392952 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
SB21_RS01995 (SB21_01995)	phrC	392936..393055 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
SB21_RS02000 (SB21_02000)	-	393203..393298 (-)	96	WP_021495118.1	YjcZ family sporulation protein	-
SB21_RS02005 (SB21_02005)	-	393393..394757 (-)	1365	WP_020955323.1	aspartate kinase	-
SB21_RS02010 (SB21_02010)	ceuB	395171..396124 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
SB21_RS02015 (SB21_02015)	-	396114..397061 (+)	948	WP_039062612.1	iron chelate uptake ABC transporter family permease subunit	-
SB21_RS02020 (SB21_02020)	-	397055..397813 (+)	759	WP_039062614.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=358315 SB21_RS01990 WP_007410270.1 391804..392952(+) (rapC) [Bacillus velezensis strain LPL-K103]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=358315 SB21_RS01990 WP_007410270.1 391804..392952(+) (rapC) [Bacillus velezensis strain LPL-K103]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATATATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTATTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAGGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568