Detailed information NTG0358186

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: GSF12_RS08855
• Genome accession: NZ_CP047226
• Coordinates: 1956745..1957422 (+)
• Length: 225 a.a.
• NCBI ID: WP_065253360.1
• Uniprot ID: -
• Organism: Moraxella osloensis strain YV1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1951745..1962422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSF12_RS08830 (GSF12_08830)	rsmI	1951846..1952694 (+)	849	WP_159375184.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	-
GSF12_RS08835 (GSF12_08835)	-	1952687..1953142 (+)	456	WP_159375185.1	hypothetical protein	-
GSF12_RS08840 (GSF12_08840)	-	1953172..1954334 (+)	1163	WP_159375186.1	IS3 family transposase	-
GSF12_RS08845 (GSF12_08845)	-	1954519..1955268 (-)	750	WP_159375187.1	sulfite exporter TauE/SafE family protein	-
GSF12_RS08850 (GSF12_08850)	coaBC	1955314..1956657 (-)	1344	WP_159375188.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
GSF12_RS08855 (GSF12_08855)	radC	1956745..1957422 (+)	678	WP_065253360.1	RadC family protein	Machinery gene
GSF12_RS08860 (GSF12_08860)	-	1957419..1957988 (-)	570	WP_159375189.1	DUF4126 domain-containing protein	-
GSF12_RS08865 (GSF12_08865)	-	1958042..1958794 (-)	753	WP_159375190.1	TSUP family transporter	-
GSF12_RS08870 (GSF12_08870)	rplQ	1958884..1959243 (-)	360	WP_036593417.1	50S ribosomal protein L17	-
GSF12_RS08875 (GSF12_08875)	-	1959264..1960271 (-)	1008	WP_159375191.1	DNA-directed RNA polymerase subunit alpha	-
GSF12_RS08880 (GSF12_08880)	rpsD	1960301..1960942 (-)	642	WP_007115568.1	30S ribosomal protein S4	-
GSF12_RS08885 (GSF12_08885)	rpsK	1960953..1961342 (-)	390	WP_007115567.1	30S ribosomal protein S11	-
GSF12_RS08890 (GSF12_08890)	rpsM	1961363..1961719 (-)	357	WP_159375192.1	30S ribosomal protein S13	-
GSF12_RS08895 (GSF12_08895)	rpmJ	1961875..1961991 (-)	117	WP_040403280.1	50S ribosomal protein L36	-

Sequence

Protein

• Length: 225 a.a.
• Molecular weight: 24574.49 Da
• Isoelectric Point: 7.3001

>NTDB_id=358186 GSF12_RS08855 WP_065253360.1 1956745..1957422(+) (radC) [Moraxella osloensis strain YV1]
MAIKDWHQDERPREKLLQKGAESLSDSEILAIFLRTGTKDQSAIELARGLIEKFGSLAQLLSAPSEAVMACHGIGMAKYA
QILASLEMGKRYLASQVKQAPTLNASQLVKDYLTTQLRPLNREVFAVLFLTNQLTLIQYEVLFTGGISSCSVCVREVLRC
ALKYGASQLIIAHNHPSTSATASQADLEITRSLAKACQLVDMTLIDHIIVGQDGTLSLQETGKMP

Nucleotide

• Length: 678 bp

>NTDB_id=358186 GSF12_RS08855 WP_065253360.1 1956745..1957422(+) (radC) [Moraxella osloensis strain YV1]
ATGGCAATCAAAGACTGGCACCAAGACGAGCGCCCCAGAGAAAAGCTACTGCAAAAAGGCGCTGAGAGTCTATCCGATAG
CGAGATTTTGGCAATATTTCTGCGCACAGGCACCAAAGACCAATCCGCCATCGAACTGGCTCGTGGCTTGATTGAAAAAT
TTGGCAGTCTGGCTCAGTTACTATCTGCGCCTAGTGAAGCAGTCATGGCGTGTCACGGTATTGGCATGGCAAAATACGCG
CAGATTTTGGCAAGCCTTGAAATGGGCAAACGCTACCTTGCCAGCCAAGTCAAACAAGCCCCTACCCTTAACGCCAGCCA
ATTGGTCAAAGACTATCTGACTACGCAGCTGCGACCGCTCAATCGCGAAGTATTTGCGGTGCTGTTTTTGACCAATCAGC
TCACCTTAATCCAGTATGAAGTGTTGTTCACAGGCGGTATTTCATCGTGCTCGGTGTGCGTGCGGGAAGTATTGCGCTGT
GCGTTAAAATACGGGGCAAGTCAGCTTATTATCGCCCATAATCACCCAAGTACCTCTGCCACAGCGTCACAAGCAGATTT
AGAGATTACCCGCAGTTTGGCAAAAGCGTGTCAGCTTGTCGATATGACTTTGATTGACCATATTATCGTAGGTCAAGATG
GCACGCTTTCTTTACAAGAAACAGGCAAGATGCCTTAG

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (105-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	43.333	93.333	0.404
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	38.326	100	0.387