Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GSF12_RS02415 Genome accession   NZ_CP047226
Coordinates   518063..518722 (+) Length   219 a.a.
NCBI ID   WP_159374248.1    Uniprot ID   -
Organism   Moraxella osloensis strain YV1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 513063..523722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF12_RS02395 (GSF12_02395) tnpA 513469..513879 (-) 411 WP_159374245.1 IS200/IS605 family transposase -
  GSF12_RS02400 (GSF12_02400) - 513928..515034 (+) 1107 WP_159374246.1 RNA-guided endonuclease InsQ/TnpB family protein -
  GSF12_RS02405 (GSF12_02405) - 515391..516380 (+) 990 WP_159374247.1 hypothetical protein -
  GSF12_RS02410 (GSF12_02410) - 516561..517925 (+) 1365 WP_159375651.1 MFS transporter -
  GSF12_RS02415 (GSF12_02415) ssb 518063..518722 (+) 660 WP_159374248.1 single-stranded DNA-binding protein Machinery gene
  GSF12_RS02420 (GSF12_02420) - 518862..519902 (-) 1041 WP_159374249.1 NADP(H)-dependent aldo-keto reductase -
  GSF12_RS02425 (GSF12_02425) gspN 520275..521099 (+) 825 WP_228274272.1 type II secretion system protein N -
  GSF12_RS02430 (GSF12_02430) - 521110..522135 (+) 1026 WP_228274273.1 type II secretion system protein N -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23582.72 Da        Isoelectric Point: 7.1982

>NTDB_id=358154 GSF12_RS02415 WP_159374248.1 518063..518722(+) (ssb) [Moraxella osloensis strain YV1]
MRGVNKVIIVGNLGSDPEVKQFANGGSVTRIAVATSEQWNDKQTGERREQTEWHRISLFNKLGEIAAQYLRKGSQVYIEG
SLRTSKYTDQNGVERYATEIRADQMQMLGTAGGVQGGIPNNNNTGTTYQNQPQGGYNQVGYNQGGNQAPNHFGGYPNQNN
AQAAPQTGQNAGFGNNPFMNGNQAPQGANIGNNQPAQNPQQNPAMAMPKPGAVDDDIPF

Nucleotide


Download         Length: 660 bp        

>NTDB_id=358154 GSF12_RS02415 WP_159374248.1 518063..518722(+) (ssb) [Moraxella osloensis strain YV1]
ATGCGCGGCGTAAATAAAGTAATCATTGTAGGCAACCTTGGTTCAGATCCTGAAGTCAAACAATTTGCCAATGGCGGTAG
CGTGACGCGTATCGCCGTGGCGACAAGTGAGCAGTGGAACGACAAACAAACAGGTGAGCGCCGCGAGCAAACAGAATGGC
ACCGTATTTCATTGTTTAATAAACTCGGTGAAATTGCAGCGCAATACCTGCGTAAAGGTAGCCAAGTCTATATCGAAGGT
AGCCTTCGCACCAGTAAATACACCGATCAAAATGGCGTAGAGCGTTATGCTACAGAGATTCGTGCCGACCAAATGCAAAT
GCTCGGTACCGCAGGCGGCGTTCAAGGCGGTATTCCTAATAACAACAATACCGGCACAACCTACCAAAACCAGCCCCAAG
GTGGTTATAATCAAGTTGGCTACAACCAAGGTGGCAACCAAGCGCCCAATCATTTTGGCGGCTATCCAAACCAAAATAAT
GCCCAAGCTGCGCCACAAACGGGTCAAAATGCAGGATTTGGCAATAACCCGTTTATGAATGGCAACCAAGCGCCACAAGG
GGCAAATATAGGAAATAATCAGCCTGCCCAAAATCCCCAACAAAACCCAGCCATGGCAATGCCAAAACCAGGCGCAGTTG
ATGATGACATCCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.059

100

0.475
  ssb Neisseria gonorrhoeae MS11

37.963

98.63

0.374