Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GR342_RS08130 Genome accession   NZ_CP047216
Coordinates   1595420..1596925 (-) Length   501 a.a.
NCBI ID   WP_072231686.1    Uniprot ID   -
Organism   Campylobacter coli strain SH89     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1590420..1601925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR342_RS08100 (GR342_08040) - 1590661..1591401 (-) 741 WP_002778542.1 TerC family protein -
  GR342_RS09130 - 1591543..1591818 (+) 276 WP_002785459.1 hypothetical protein -
  GR342_RS09135 - 1591826..1592260 (+) 435 WP_346791454.1 ankyrin repeat domain-containing protein -
  GR342_RS08110 (GR342_08050) - 1592426..1592662 (+) 237 WP_002778540.1 hypothetical protein -
  GR342_RS08115 (GR342_08055) purN 1592800..1593375 (-) 576 WP_002778539.1 phosphoribosylglycinamide formyltransferase -
  GR342_RS08120 (GR342_08060) - 1593366..1594736 (-) 1371 WP_057991551.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  GR342_RS08125 (GR342_08065) - 1594720..1595418 (-) 699 WP_002778537.1 NYN domain-containing protein -
  GR342_RS08130 (GR342_08070) comM 1595420..1596925 (-) 1506 WP_072231686.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GR342_RS08135 (GR342_08075) def 1596922..1597449 (-) 528 WP_002778535.1 peptide deformylase -
  GR342_RS08140 (GR342_08080) clpP 1597477..1598061 (-) 585 WP_002783575.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  GR342_RS08145 (GR342_08085) tig 1598061..1599386 (-) 1326 WP_250407313.1 trigger factor -
  GR342_RS08150 (GR342_08090) folE 1599507..1600079 (+) 573 WP_002778530.1 GTP cyclohydrolase I FolE -
  GR342_RS08155 (GR342_08095) fliI 1600079..1601464 (+) 1386 WP_072232192.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56565.55 Da        Isoelectric Point: 8.7459

>NTDB_id=358136 GR342_RS08130 WP_072231686.1 1595420..1596925(-) (comM) [Campylobacter coli strain SH89]
MKKLKCVSFDENLDIIDVESTFTRGLPNLSIVGLANIAIKESIERIKATLLTCNFSFPAKKITINLSPSGIPKKGSHFDL
VIATLILLQNEDFDDFFVVGELGLDGSIKSTNELFSLLLFLSTKVKSAKVVVPKNIALKASMIPNLEIYGLEHLNEVIEF
FKEKNYEKFKFTQSHPLFANPLIIENEIFIKNHHFELDFKDIKGQEKAKRACLIAALGMHNILFEGSPGSGKSMCAKRLV
EIMPPQSLSEILTQNAYMSLNSKDCEFTQKRALRHPHHTSTRASIFGGGAKNAKIGEIALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKTTYETKFSFVAAQNPCPCGNLFSKNLSCVCSENEIKRYKNHISAPIMDRIDLYVAMDEISK
DDKSSINSKEMSERILKAFIFGKKRGQKEFNGKLNDTELQKFCILEKDAKDTLDLAISRYNLSQRALNKILKVSRSIADF
EEKELLSKNHILEALSFRMRS

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=358136 GR342_RS08130 WP_072231686.1 1595420..1596925(-) (comM) [Campylobacter coli strain SH89]
ATGAAAAAATTAAAATGTGTAAGCTTTGATGAGAATTTAGATATCATCGATGTAGAGTCTACATTTACAAGAGGCTTACC
TAATTTAAGCATAGTCGGACTTGCAAATATTGCAATTAAAGAAAGTATCGAGCGTATCAAAGCCACACTTTTAACTTGCA
ATTTTTCATTTCCTGCTAAAAAAATCACCATCAATCTTAGCCCTTCAGGAATTCCAAAAAAAGGTTCTCATTTTGATTTA
GTTATCGCTACGCTTATATTGTTGCAAAATGAAGACTTTGATGATTTTTTTGTGGTAGGCGAGCTTGGTCTTGATGGAAG
TATCAAAAGCACCAATGAGCTTTTTTCTTTACTTTTATTTTTATCCACAAAGGTAAAAAGTGCAAAAGTTGTAGTCCCAA
AAAATATAGCTCTAAAAGCTTCTATGATACCCAATCTAGAAATTTATGGACTTGAGCATTTAAATGAAGTGATTGAATTT
TTTAAAGAAAAAAACTATGAGAAATTCAAATTCACCCAAAGCCATCCTTTATTTGCAAATCCTTTGATTATAGAAAATGA
AATTTTTATTAAAAATCATCATTTTGAACTTGATTTTAAAGATATCAAAGGACAAGAAAAAGCTAAAAGAGCTTGTTTGA
TAGCAGCACTAGGTATGCACAATATACTTTTTGAAGGAAGTCCAGGAAGTGGCAAAAGTATGTGTGCAAAACGCCTTGTT
GAAATCATGCCTCCACAAAGTTTAAGTGAAATTTTAACGCAAAATGCTTATATGTCTTTAAATTCTAAAGATTGCGAATT
TACGCAAAAAAGAGCCTTAAGACACCCTCATCATACCTCTACAAGAGCTAGTATTTTTGGTGGTGGAGCAAAAAATGCGA
AGATAGGTGAAATCGCTCTAGCTAATGGTGGAGTTTTATTTTTTGATGAATTTCCTCATTTTAACAAACAGATTATCGAA
AGTCTAAGAGAACCTCTAGAAGATCATAAAATTCATATTTCAAGAGTCAATTCAAAAACCACTTATGAAACCAAATTCAG
TTTTGTTGCCGCTCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTGTCTTGCGTTTGTAGTGAAAATGAGA
TTAAAAGGTATAAAAATCACATTTCAGCCCCTATTATGGATAGAATTGATCTTTATGTAGCTATGGATGAGATCAGCAAA
GATGATAAGTCAAGTATAAATTCAAAAGAAATGAGTGAAAGAATTTTAAAGGCTTTTATCTTTGGCAAAAAACGCGGCCA
AAAAGAATTTAATGGCAAATTAAACGATACAGAATTGCAAAAATTTTGTATTTTAGAAAAAGATGCCAAGGATACTTTGG
ATTTAGCCATTTCGCGTTATAATCTTTCACAAAGAGCTTTAAATAAAATTTTAAAAGTTTCAAGATCTATTGCAGATTTT
GAAGAAAAAGAACTTCTTAGTAAAAATCATATTTTAGAAGCTTTGAGTTTTAGGATGAGGAGTTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-135)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

46.293

99.601

0.461

Multiple sequence alignment