Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GR342_RS03045 Genome accession   NZ_CP047216
Coordinates   592623..593198 (-) Length   191 a.a.
NCBI ID   WP_002776257.1    Uniprot ID   A0ABN0EQ59
Organism   Campylobacter coli strain SH89     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 587623..598198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR342_RS03025 (GR342_03000) - 588527..589666 (+) 1140 WP_002776249.1 hydrogenase small subunit -
  GR342_RS03030 (GR342_03005) - 589672..591387 (+) 1716 WP_250414751.1 nickel-dependent hydrogenase large subunit -
  GR342_RS03035 (GR342_03010) cybH 591399..592091 (+) 693 WP_052779055.1 Ni/Fe-hydrogenase, b-type cytochrome subunit -
  GR342_RS03040 (GR342_03015) - 592088..592621 (+) 534 WP_002780939.1 HyaD/HybD family hydrogenase maturation endopeptidase -
  GR342_RS03045 (GR342_03020) recR 592623..593198 (-) 576 WP_002776257.1 recombination mediator RecR Machinery gene
  GR342_RS03050 (GR342_03025) - 593188..594438 (-) 1251 WP_002776258.1 ArsS family sensor histidine kinase -
  GR342_RS03055 (GR342_03030) - 594435..595106 (-) 672 WP_002776259.1 response regulator transcription factor -
  GR342_RS03060 (GR342_03035) dnaJ 595253..596377 (+) 1125 WP_250414748.1 molecular chaperone DnaJ -
  GR342_RS03065 (GR342_03040) - 596517..597755 (-) 1239 WP_072232202.1 major outer membrane protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21732.15 Da        Isoelectric Point: 6.1072

>NTDB_id=358101 GR342_RS03045 WP_002776257.1 592623..593198(-) (recR) [Campylobacter coli strain SH89]
MTHKGIEKFNELVESFAKLPTIGKKTAIRLAYHICTGNQLEGMKLAHNIENAIRFIKPCQQCGSLSENELCEICTDDERD
KNCLCIVQSPKDVLVIEESKSYGGLYFVLDELNDEKLAQLRQMILKLQSKELIFAFTHNLNSDAMIFYIEDRLKDLNLQF
SKIAQGIPSGVNLENVDFISLNKAINFRTKV

Nucleotide


Download         Length: 576 bp        

>NTDB_id=358101 GR342_RS03045 WP_002776257.1 592623..593198(-) (recR) [Campylobacter coli strain SH89]
ATGACGCATAAGGGTATAGAAAAATTTAACGAACTTGTAGAAAGTTTTGCAAAATTACCCACTATCGGTAAAAAAACTGC
TATTCGCCTTGCTTATCATATTTGCACAGGAAATCAACTCGAAGGTATGAAGCTCGCACACAATATAGAAAATGCTATAC
GCTTTATAAAACCCTGTCAACAATGCGGGTCTTTAAGCGAAAACGAACTTTGTGAAATTTGCACCGATGATGAAAGGGAT
AAAAATTGCTTATGTATAGTGCAAAGCCCTAAAGATGTTTTGGTTATAGAAGAGAGTAAAAGTTATGGGGGCTTGTATTT
TGTTTTAGATGAATTAAACGATGAAAAGCTTGCTCAATTAAGACAAATGATACTAAAATTACAAAGCAAAGAACTCATTT
TTGCTTTCACTCATAATTTAAATTCCGATGCAATGATTTTTTATATAGAAGATAGGCTTAAAGATTTAAATTTACAATTT
AGCAAAATCGCACAAGGTATTCCAAGTGGAGTAAATTTAGAAAATGTTGACTTTATATCTCTAAACAAAGCCATCAATTT
TCGCACCAAAGTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

36.649

100

0.366

Multiple sequence alignment