Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GR339_RS03110 Genome accession   NZ_CP047212
Coordinates   612980..613474 (-) Length   164 a.a.
NCBI ID   WP_002786475.1    Uniprot ID   -
Organism   Campylobacter coli strain JZ_1_79     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 607980..618474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR339_RS03095 (GR339_03070) metE 608601..610865 (-) 2265 WP_002813408.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  GR339_RS03100 (GR339_03075) - 610888..611658 (-) 771 WP_250423995.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  GR339_RS03105 (GR339_03080) - 611672..612664 (-) 993 WP_151285180.1 isopenicillin N synthase family oxygenase -
  GR339_RS03110 (GR339_03085) luxS 612980..613474 (-) 495 WP_002786475.1 S-ribosylhomocysteine lyase Regulator
  GR339_RS03115 (GR339_03090) gatB 613589..615007 (+) 1419 WP_002777351.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  GR339_RS03120 (GR339_03095) - 615007..615906 (+) 900 WP_002777349.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  GR339_RS03125 (GR339_03100) - 615915..617096 (+) 1182 WP_206897143.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.19 Da        Isoelectric Point: 5.0135

>NTDB_id=358022 GR339_RS03110 WP_002786475.1 612980..613474(-) (luxS) [Campylobacter coli strain JZ_1_79]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEASMKDILNVSDQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGIMNNEELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=358022 GR339_RS03110 WP_002786475.1 612980..613474(-) (luxS) [Campylobacter coli strain JZ_1_79]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCGCCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCACACCTGATGAAAAAAGTGTTGCTAAAGCTTGGGAAGCCTC
AATGAAAGATATTTTAAATGTGAGCGATCAAAGTCAAATTCCTGAACTCAATATCTATCAATGTGGAACTTGTGCTATGC
ATTCTTTGGATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTACCATAGGCATAATGAACAACGAAGAATTAAAA
CTTGAAAATATCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

98.171

0.701

Multiple sequence alignment