Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   GQY29_RS04120 Genome accession   NZ_CP047191
Coordinates   756973..757290 (+) Length   105 a.a.
NCBI ID   WP_023909975.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EU01     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 751973..762290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQY29_RS04085 (GQY29_04085) - 753232..753594 (+) 363 WP_023909982.1 DUF1033 family protein -
  GQY29_RS04090 (GQY29_04090) comGA 753675..754616 (+) 942 WP_014622005.1 competence type IV pilus ATPase ComGA Machinery gene
  GQY29_RS04095 (GQY29_04095) comGB 754498..755598 (+) 1101 WP_159340986.1 competence type IV pilus assembly protein ComGB Machinery gene
  GQY29_RS04100 (GQY29_04100) comGC 755595..755921 (+) 327 WP_023909980.1 competence type IV pilus major pilin ComGC Machinery gene
  GQY29_RS04105 (GQY29_04105) comGD 755881..756309 (+) 429 WP_171815055.1 competence type IV pilus minor pilin ComGD Machinery gene
  GQY29_RS04110 (GQY29_04110) comGE 756281..756574 (+) 294 WP_023909978.1 competence type IV pilus minor pilin ComGE Machinery gene
  GQY29_RS04115 (GQY29_04115) comGF 756558..756995 (+) 438 WP_084825661.1 competence type IV pilus minor pilin ComGF Machinery gene
  GQY29_RS04120 (GQY29_04120) comGG 756973..757290 (+) 318 WP_023909975.1 competence type IV pilus minor pilin ComGG Machinery gene
  GQY29_RS04125 (GQY29_04125) comGH 757335..758291 (+) 957 WP_023909974.1 class I SAM-dependent methyltransferase Machinery gene
  GQY29_RS04130 (GQY29_04130) - 758347..759540 (+) 1194 WP_084825660.1 acetate kinase -
  GQY29_RS04135 (GQY29_04135) - 759788..759985 (+) 198 WP_159340988.1 helix-turn-helix transcriptional regulator -
  GQY29_RS10680 (GQY29_04140) - 759997..760272 (+) 276 WP_100273190.1 CAAX protease -
  GQY29_RS10685 (GQY29_04145) - 760316..760654 (+) 339 WP_228024408.1 CPBP family intramembrane glutamic endopeptidase -
  GQY29_RS04150 (GQY29_04150) - 760728..761171 (+) 444 WP_041829335.1 hypothetical protein -
  GQY29_RS04155 (GQY29_04155) - 761268..761930 (+) 663 WP_084826165.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11836.09 Da        Isoelectric Point: 11.0805

>NTDB_id=357891 GQY29_RS04120 WP_023909975.1 756973..757290(+) (comGG) [Streptococcus thermophilus strain EU01]
MLLKKQVRGGVLLYALFMAGIFTLLLQVYLERVVASSRQNKAQIVASQSRLMAEMTMALVDKKAGAFSFSQGTTTYEIKG
KQVIVRVASKGQIKTYRYVKKQEQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=357891 GQY29_RS04120 WP_023909975.1 756973..757290(+) (comGG) [Streptococcus thermophilus strain EU01]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTACACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACAAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGCCTTGGTGGATAAGAAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGATTAAGGGT
AAGCAAGTGATTGTCAGAGTTGCCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGAGCAGAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

43.434

94.286

0.41
  comGG Streptococcus mutans UA159

43.434

94.286

0.41