Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   D1605_RS09010 Genome accession   NZ_CP047171
Coordinates   2005367..2007523 (-) Length   718 a.a.
NCBI ID   WP_004089924.1    Uniprot ID   B2I8C5
Organism   Xylella fastidiosa subsp. fastidiosa strain IVIA5235     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2000367..2012523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1605_RS08995 (D1605_009115) - 2001730..2002998 (-) 1269 WP_140161158.1 lipase family protein -
  D1605_RS09000 (D1605_009120) - 2003584..2004783 (-) 1200 WP_011098220.1 cytochrome P450 -
  D1605_RS09005 - 2005146..2005292 (-) 147 WP_012338047.1 hypothetical protein -
  D1605_RS09010 (D1605_009125) recG 2005367..2007523 (-) 2157 WP_004089924.1 ATP-dependent DNA helicase RecG Machinery gene
  D1605_RS09015 (D1605_009130) - 2007532..2007915 (-) 384 WP_004089926.1 RidA family protein -
  D1605_RS09020 (D1605_009135) - 2008118..2010289 (-) 2172 WP_004089929.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 718 a.a.        Molecular weight: 78625.17 Da        Isoelectric Point: 8.0752

>NTDB_id=357831 D1605_RS09010 WP_004089924.1 2005367..2007523(-) (recG) [Xylella fastidiosa subsp. fastidiosa strain IVIA5235]
MPRARSHAIDLNVAGNAPLSVLPRVGPVLAGKCAARGIFTLQDLWLLLPLRYEDRTRLTPIAELQDGVAVQIEARVEAVE
RSFRYRPLLRVVLSDDAHHILTMRFFHFRAAQIARFTVGTRVRAYGVPKLGQYGWEIVHPSYRILAPGEAVSLNDCLDPV
YPVIDGVGPAIVRQLIREALEHLPTDAALELLPDVWLSDLGLPTLRTALLIMHRPPLDADIARLMVGTHPAQQRLSLEEL
LSHQLSLRRQRIALQRHSAPALPDGAALVASLLHALPFHLTAAQQRVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALA
ALLAVEQNKQVALAAPTALLAEQHFINLRDWLEPLGVRVYWLAAKVTGKARLQALNDVASGDAQVVVGTHALMQESVVFH
DLALTIVDEQHRFGVHQRLLLRDKGATDGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMPPGRTPVQTNVLSAERRP
ELVERIRLACAQGRQVYWVCTLIDESQTEAEQAPPSSNDIGHRSEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRT
MRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGSVVSSCVLLYQPPLSMLARQRLQIMRQ
TNDGFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPRVYSLANMLLDESPQLADQVIARWIGSAVRYASA

Nucleotide


Download         Length: 2157 bp        

>NTDB_id=357831 D1605_RS09010 WP_004089924.1 2005367..2007523(-) (recG) [Xylella fastidiosa subsp. fastidiosa strain IVIA5235]
ATGCCGCGTGCACGTTCGCATGCCATCGACTTGAACGTAGCTGGCAATGCCCCATTGTCGGTGCTGCCGCGGGTTGGGCC
GGTATTAGCTGGAAAATGCGCTGCACGTGGCATCTTCACCTTGCAGGATTTGTGGCTACTGCTCCCATTACGTTATGAGG
ACCGTACCCGGCTAACCCCGATTGCCGAGCTTCAGGATGGGGTTGCGGTTCAGATTGAGGCCCGAGTGGAAGCGGTGGAG
CGTAGTTTCCGTTACCGGCCGCTATTACGCGTGGTGTTGTCCGACGACGCACATCACATACTGACGATGCGTTTTTTCCA
TTTTCGCGCCGCACAGATTGCACGGTTTACTGTCGGCACACGGGTGCGTGCGTATGGCGTACCCAAACTTGGCCAATATG
GTTGGGAGATTGTCCATCCCAGCTACCGCATTCTTGCCCCTGGTGAAGCTGTCAGCCTCAATGACTGCTTGGACCCTGTG
TATCCGGTGATTGATGGCGTGGGGCCTGCCATCGTGCGTCAGCTCATCCGCGAAGCGTTGGAACATTTACCTACGGATGC
AGCCTTAGAACTCTTGCCAGACGTTTGGTTGAGTGACCTTGGCCTGCCAACGCTGCGTACAGCCCTACTTATCATGCACC
GGCCCCCGCTGGATGCGGATATTGCCCGATTGATGGTGGGCACTCACCCCGCGCAGCAGCGCTTGTCGTTGGAAGAATTG
CTTTCCCACCAACTCAGCCTGCGTCGCCAGCGCATTGCATTGCAACGTCATTCCGCCCCCGCATTGCCTGATGGAGCGGC
TTTGGTGGCCTCTTTGTTGCACGCACTGCCGTTTCACCTCACTGCTGCGCAGCAACGGGTATTCGCCCAGATTGCTGCTG
ATGTGGCCAAGCCGGTCCCAATGCTGCGTCTTGTGCAGGGTGATGTTGGCAGCGGTAAGACCGTGGTTGCAGCATTGGCC
GCATTACTTGCTGTTGAGCAAAACAAGCAGGTGGCTCTGGCGGCACCGACAGCGTTACTGGCCGAGCAACACTTTATCAA
CCTGCGTGACTGGCTGGAGCCATTGGGCGTGCGTGTGTATTGGTTGGCTGCCAAGGTGACCGGCAAGGCCCGTCTCCAAG
CGCTGAATGATGTGGCCTCTGGTGATGCGCAGGTGGTCGTCGGTACACATGCCCTGATGCAAGAGTCTGTGGTGTTTCAT
GACTTGGCACTGACCATTGTCGATGAACAGCACCGTTTTGGCGTCCATCAGCGCTTGTTGCTTCGTGACAAAGGGGCTAC
TGATGGCATTGTGCCGCATCAGTTAGTGATGACCGCTACACCGATTCCACGCACCTTAGCGATGGCTGCGTATGCTGATT
TGGATGTTTCGGTGATTGACGAAATGCCGCCTGGCCGTACCCCGGTGCAAACGAATGTATTGAGTGCTGAGCGTCGCCCG
GAATTGGTGGAACGTATCCGTCTGGCTTGTGCTCAGGGGCGCCAGGTTTATTGGGTGTGTACGCTGATCGACGAAAGCCA
AACGGAAGCAGAACAGGCACCCCCCAGCAGTAACGATATTGGGCATCGCAGCGAGGTACAGGCGGCACAGGCCACCTATG
AAGCACTGTCTGCACAATTGCCTGGTGTCCGTGTCGGACTCGTGCATGGGCGCATGAAGGCAGCGGAAAAACAGCGGACA
ATGCGTGCGTTCAAATGCAACGAAATTGATGTCTTAGTTGCTACCACGGTGATTGAGGTGGGTGTCGATGTCCCCAATGC
GTCGCTCATGATTATCGAAAATGCTGAGCGTTTGGGTTTAGCGCAACTCCATCAGTTACGTGGTCGGGTCGGACGTGGTT
CTGTTGTGTCAAGTTGCGTTCTGTTGTATCAGCCCCCACTGTCGATGCTGGCGCGTCAGCGTCTGCAAATCATGCGCCAG
ACGAACGATGGTTTTGCGATTGCTGAAAAAGATCTGGAATTACGTGGTCCCGGCGAATTGTTGGGGACACGTCAAACAGG
TCTTGCAGCGTTTCGTGTTGCTGACCTTGCCCGCGATGCCCATCTGCTGCCCCGCGTGTATTCGTTGGCGAACATGTTGC
TTGACGAATCGCCACAGTTAGCTGATCAAGTGATTGCGCGCTGGATTGGTAGTGCGGTGCGTTATGCATCCGCCTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(35-181)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(641-701)

Helicase conserved C-terminal domain (Helicase_C)

(534-613)

DEAD/DEAH box helicase (DEAD)

(283-417)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2I8C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

47.832

96.379

0.461
  recG/mmsA Streptococcus pneumoniae R6

37.755

95.543

0.361
  recG/mmsA Streptococcus pneumoniae R36A

37.755

95.543

0.361