Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D1605_RS05595 Genome accession   NZ_CP047171
Coordinates   1269925..1270521 (-) Length   198 a.a.
NCBI ID   WP_011097918.1    Uniprot ID   Q87CK8
Organism   Xylella fastidiosa subsp. fastidiosa strain IVIA5235     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1264925..1275521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1605_RS05570 (D1605_005680) - 1265059..1266012 (+) 954 WP_010894280.1 MoxR family ATPase -
  D1605_RS05575 (D1605_005685) - 1266015..1266974 (+) 960 WP_004084883.1 DUF58 domain-containing protein -
  D1605_RS05580 (D1605_005690) - 1266967..1269024 (+) 2058 WP_011097916.1 DUF3488 and transglutaminase-like domain-containing protein -
  D1605_RS05585 (D1605_005695) - 1268918..1269439 (+) 522 WP_027700741.1 Slp/YeaY family lipoprotein -
  D1605_RS05590 (D1605_005700) - 1269506..1269853 (-) 348 WP_014607772.1 histidine triad nucleotide-binding protein -
  D1605_RS05595 (D1605_005705) recR 1269925..1270521 (-) 597 WP_011097918.1 recombination mediator RecR Machinery gene
  D1605_RS05600 (D1605_005710) - 1270714..1271034 (-) 321 WP_004572794.1 YbaB/EbfC family nucleoid-associated protein -
  D1605_RS05605 (D1605_005715) dnaX 1271041..1272672 (-) 1632 WP_004572793.1 DNA polymerase III subunit gamma/tau -
  D1605_RS05615 (D1605_005725) - 1273301..1273801 (+) 501 WP_228446137.1 DNA replication protein DnaD -
  D1605_RS05620 - 1273791..1273943 (+) 153 WP_012382609.1 hypothetical protein -
  D1605_RS05625 (D1605_005730) - 1274816..1275115 (-) 300 WP_004572790.1 DNA adenine methylase -
  D1605_RS11930 - 1275108..1275281 (-) 174 WP_306308839.1 DNA adenine methylase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21791.85 Da        Isoelectric Point: 6.5786

>NTDB_id=357817 D1605_RS05595 WP_011097918.1 1269925..1270521(-) (recR) [Xylella fastidiosa subsp. fastidiosa strain IVIA5235]
MSTHLLEQLIDAFRILPGVGQKTAQRMAYHMLEREREGGQRLADVLSRAIEKIGHCTECRDFSETKICAICANSSRDRHQ
LCVVESPPDRLAIEQATGYRGLYFILQGRLSPLDGIGPHELGLDHLGQRLAAGEVTELIIATNATVEGETTAHYLALLAR
QHGIRPSRLAQGLPLGGELEYLDRGTLSHAFGTRTEVV

Nucleotide


Download         Length: 597 bp        

>NTDB_id=357817 D1605_RS05595 WP_011097918.1 1269925..1270521(-) (recR) [Xylella fastidiosa subsp. fastidiosa strain IVIA5235]
ATGAGTACACATTTGCTTGAGCAGTTAATTGACGCCTTCCGTATCTTGCCAGGTGTCGGTCAGAAGACCGCGCAGCGTAT
GGCCTACCATATGCTTGAGCGCGAGCGTGAAGGTGGACAGCGCTTGGCTGATGTGCTGAGCCGTGCGATTGAGAAAATTG
GTCATTGTACGGAGTGTCGTGACTTCAGTGAGACCAAAATCTGTGCGATCTGCGCTAACTCCAGCCGTGACCGTCATCAG
TTGTGCGTGGTCGAGTCCCCCCCTGATCGGCTGGCGATTGAGCAAGCCACTGGCTACCGTGGACTATATTTTATTTTGCA
GGGGCGCCTGTCCCCGCTGGATGGGATCGGCCCTCATGAACTTGGGTTGGACCATTTAGGACAACGTCTTGCTGCAGGTG
AGGTGACGGAGCTCATCATTGCGACTAATGCGACGGTGGAGGGTGAGACGACAGCGCACTACTTAGCGCTCCTGGCGCGC
CAACACGGTATACGCCCCAGCCGACTGGCACAAGGTTTGCCCTTGGGTGGGGAGCTGGAATACTTAGACCGCGGCACTCT
TTCGCACGCGTTCGGCACCCGTACTGAAGTGGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(39-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87CK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.75

96.97

0.424
  recR Bacillus subtilis subsp. subtilis str. 168

41.667

96.97

0.404
  recR Streptococcus pneumoniae R6

38.542

96.97

0.374

Multiple sequence alignment