Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GR131_RS16690 Genome accession   NZ_CP047147
Coordinates   3883094..3883693 (+) Length   199 a.a.
NCBI ID   WP_008413902.1    Uniprot ID   A0ABR4S3X7
Organism   Streptomyces sp. GF20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3878094..3888693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR131_RS16665 (GR131_16665) - 3878256..3879650 (+) 1395 WP_159312760.1 aspartate aminotransferase family protein -
  GR131_RS16670 (GR131_16670) - 3879873..3880565 (+) 693 WP_010644019.1 GntR family transcriptional regulator -
  GR131_RS16675 (GR131_16675) - 3880705..3881355 (+) 651 WP_008413909.1 hypothetical protein -
  GR131_RS16680 (GR131_16680) - 3881380..3882126 (-) 747 WP_018470320.1 SLATT domain-containing protein -
  GR131_RS16685 (GR131_16685) - 3882540..3882881 (+) 342 WP_008413904.1 YbaB/EbfC family nucleoid-associated protein -
  GR131_RS16690 (GR131_16690) recR 3883094..3883693 (+) 600 WP_008413902.1 recombination mediator RecR Machinery gene
  GR131_RS16695 (GR131_16695) - 3883686..3884345 (+) 660 WP_015507474.1 DUF5063 domain-containing protein -
  GR131_RS16700 (GR131_16700) - 3884466..3884693 (+) 228 WP_015507473.1 hypothetical protein -
  GR131_RS16705 (GR131_16705) - 3884960..3886231 (+) 1272 WP_008413895.1 aspartate kinase -
  GR131_RS16710 (GR131_16710) - 3886228..3887328 (+) 1101 WP_008413893.1 aspartate-semialdehyde dehydrogenase -
  GR131_RS16715 (GR131_16715) - 3887958..3888551 (+) 594 WP_008413891.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21801.11 Da        Isoelectric Point: 5.1616

>NTDB_id=357755 GR131_RS16690 WP_008413902.1 3883094..3883693(+) (recR) [Streptomyces sp. GF20]
MYEGVVQELIDELGRLPGVGPKSAQRIAFHILQAEPADVRRLAHSLLEVKDKVRFCSVCGNVAQQEQCGICRDQRRDAAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=357755 GR131_RS16690 WP_008413902.1 3883094..3883693(+) (recR) [Streptomyces sp. GF20]
GTGTACGAAGGCGTGGTCCAGGAGCTGATCGACGAGCTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCTTTCCACATCCTCCAGGCGGAGCCGGCCGACGTGCGGCGCCTCGCGCACTCCCTGCTGGAAGTGAAGGACAAGGTCC
GCTTCTGCTCGGTCTGCGGGAACGTCGCGCAGCAGGAGCAGTGCGGCATCTGCCGCGACCAGCGCCGCGACGCCGCGGTG
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTGGCGATCGAGCGGACCCGGGAGTTCCGGGGCCGCTACCACGTGCTCGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGTGAACTCCTCGCCCGGCTCGCCGACGGCA
CCGTCACCGAGCTGATCCTCGCCACCGATCCCAACCTGGAGGGCGAGGCCACGGCGACGTACCTCGCCCGGATGATCAAG
CCCATGGGTCTGAAGGTCACCCGCCTCGCCAGCGGGCTGCCGGTGGGCGGAGACCTGGAATACGCGGACGAGGTCACTCT
GGGCCGCGCCTTCGAAGGGAGACGACTCCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462