Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GR130_RS37945 Genome accession   NZ_CP047146
Coordinates   8712232..8712831 (-) Length   199 a.a.
NCBI ID   WP_159509022.1    Uniprot ID   -
Organism   Streptomyces sp. GS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8707232..8717831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR130_RS37925 (GR130_37925) - 8707764..8708339 (-) 576 WP_201305259.1 SigE family RNA polymerase sigma factor -
  GR130_RS37930 (GR130_37930) - 8708846..8709976 (-) 1131 WP_159509016.1 aspartate-semialdehyde dehydrogenase -
  GR130_RS37935 (GR130_37935) - 8709973..8711244 (-) 1272 WP_159509018.1 aspartate kinase -
  GR130_RS37940 (GR130_37940) - 8711577..8712239 (-) 663 WP_159509020.1 DUF5063 domain-containing protein -
  GR130_RS37945 (GR130_37945) recR 8712232..8712831 (-) 600 WP_159509022.1 recombination mediator RecR Machinery gene
  GR130_RS37950 (GR130_37950) - 8712883..8713233 (-) 351 WP_078893978.1 YbaB/EbfC family nucleoid-associated protein -
  GR130_RS37955 (GR130_37955) - 8713495..8715990 (-) 2496 WP_159509024.1 DNA polymerase III subunit gamma and tau -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21733.09 Da        Isoelectric Point: 4.8542

>NTDB_id=357719 GR130_RS37945 WP_159509022.1 8712232..8712831(-) (recR) [Streptomyces sp. GS7]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLANALMEVKAKVRFCSVCGNVAQEEQCRVCLDPRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLTVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=357719 GR130_RS37945 WP_159509022.1 8712232..8712831(-) (recR) [Streptomyces sp. GS7]
GTGTATGAAGGCGTGGTCCAGGATCTGATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTTCAGGCCGAGCCGACCGATGTCCGCCGGCTCGCGAACGCGCTGATGGAGGTCAAGGCGAAGGTCC
GGTTCTGCTCCGTGTGCGGCAATGTCGCGCAGGAGGAGCAGTGCCGGGTCTGCCTGGACCCGCGGCGCGATCCGGCGGTC
ATCTGCGTCGTGGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACGCGGGAGTTCCGCGGCCGGTACCACGTCCTCGG
CGGGGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTGCGGATACGGGAACTGCTGGCCAGGCTCGCGGACGGCG
CGGTCACCGAGCTGATCCTGGCCACCGACCCGAATCTGGAGGGCGAGGCCACGGCCACGTACCTGGCCCGCATGATCAAG
CCGATGGGCCTCACAGTGACGCGACTGGCCAGCGGACTGCCGGTCGGAGGCGATCTGGAGTATGCCGACGAGGTCACGCT
CGGGCGGGCCTTCGAAGGGAGGAGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452

Multiple sequence alignment