Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   GR130_RS36880 Genome accession   NZ_CP047146
Coordinates   8486439..8487851 (+) Length   470 a.a.
NCBI ID   WP_159508719.1    Uniprot ID   -
Organism   Streptomyces sp. GS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8481439..8492851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR130_RS36865 (GR130_36865) - 8482524..8483456 (-) 933 WP_159508716.1 Ppx/GppA phosphatase family protein -
  GR130_RS36870 (GR130_36870) - 8483514..8484389 (+) 876 WP_159508717.1 hypothetical protein -
  GR130_RS36875 (GR130_36875) - 8484411..8486240 (-) 1830 WP_159508718.1 sigma-70 family RNA polymerase sigma factor -
  GR130_RS36880 (GR130_36880) radA/sms 8486439..8487851 (+) 1413 WP_159508719.1 DNA repair protein RadA Machinery gene
  GR130_RS36885 (GR130_36885) disA 8487985..8489109 (+) 1125 WP_159508720.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  GR130_RS36890 (GR130_36890) - 8489223..8490209 (-) 987 WP_159508721.1 NAD-dependent epimerase/dehydratase family protein -
  GR130_RS36895 (GR130_36895) - 8490386..8491240 (-) 855 WP_159508722.1 hypothetical protein -
  GR130_RS36900 (GR130_36900) - 8491688..8492191 (-) 504 WP_159508723.1 pyridoxamine 5'-phosphate oxidase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49457.63 Da        Isoelectric Point: 8.2550

>NTDB_id=357714 GR130_RS36880 WP_159508719.1 8486439..8487851(+) (radA/sms) [Streptomyces sp. GS7]
MATRKSSAKERPSYRCKECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAPGRVTTAALPIGQVDGRQAAARSTGVPE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASGSHRTLYVTGEESASQVRLRADRIGALDEDLYLAAETDLSAV
LGHLDTVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLH
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAARLGFTHALVPADPGKIPAGMRVLEVADVGQALSVLPKRVRREAPREEDARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=357714 GR130_RS36880 WP_159508719.1 8486439..8487851(+) (radA/sms) [Streptomyces sp. GS7]
ATGGCAACTCGCAAATCGTCGGCCAAGGAGCGCCCGTCGTATCGCTGCAAGGAGTGCGGCTGGACCACCGCGAAGTGGCT
CGGCCGCTGCCCGGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTTCGGCGGCGCCCCCGCGGTGCGCACCACCGCCCCCG
GCCGGGTCACCACCGCCGCGCTGCCCATCGGCCAGGTCGACGGCAGGCAGGCCGCCGCCCGCTCCACCGGCGTGCCCGAG
CTGGACCGCGTCCTGGGCGGCGGGCTGGTCCCGGGCGCGGTGGTGCTGCTGGCCGGTGAACCCGGTGTCGGCAAGTCCAC
GCTCCTGCTGGACGTCGCCGCCAAGGCCGCCTCCGGCAGCCACCGCACGCTCTATGTGACCGGCGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGCGCCGACCGCATCGGGGCCCTCGACGAGGACCTCTATCTGGCCGCCGAGACCGACCTCTCCGCCGTC
CTCGGCCATCTGGACACGGTCAAGCCCTCGCTGCTCGTCCTGGACTCCGTGCAGACTGTCGCCTCCCCCGAGATCGACGG
CGCCCCCGGCGGGATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGGGCCTCCAAGGAGCGCGGCATGTCGACGC
TCCTGGTCGGCCACGTCACCAAGGACGGCGCCATCGCCGGCCCCCGCCTCCTGGAGCACCTGGTCGACGTCGTGCTGCAT
TTCGAGGGCGACCGGCACGCCCGGCTCCGCCTCGTCCGCGGCGTCAAGAACCGCTACGGCACGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGGCTCGCCGACCCCTCCGGCCTCTTCCTGACCCGCCGCGACGAGCCGGTGC
CCGGGACGTGCCTGACGGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGGCGCTGACCGTCGACTCGCAG
ATCCCCTCCCCGCGGCGGACCACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGG
CCGGATCAGCGCCCTGGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCGGCCGCCGACC
TCGCCGTGGCGCTCGCCCTGGCCAGCGCCGCCAGCGACACCCCGCTGCCGAAGAACCTGGTCGCCATCGGCGAGGTCGGC
CTGGCCGGCGAGGTGCGGCGGGTCACCGGCGTCCAGCGCCGCCTCTCGGAGGCCGCCCGGCTCGGCTTCACGCACGCCCT
GGTCCCGGCGGATCCGGGCAAGATCCCCGCCGGCATGCGGGTCCTGGAGGTCGCCGACGTCGGTCAGGCGCTGTCCGTGC
TGCCCAAGCGGGTGCGCCGGGAGGCCCCGCGGGAGGAGGACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(78-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.027

96.17

0.423
  radA Streptococcus pneumoniae Rx1

42.92

96.17

0.413
  radA Streptococcus pneumoniae D39

42.92

96.17

0.413
  radA Streptococcus pneumoniae R6

42.92

96.17

0.413
  radA Streptococcus pneumoniae TIGR4

42.92

96.17

0.413
  radA Streptococcus mitis SK321

44.289

91.277

0.404
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404