Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E6A57_RS01755 Genome accession   NZ_CP039266
Coordinates   338892..340268 (+) Length   458 a.a.
NCBI ID   WP_158181707.1    Uniprot ID   -
Organism   Lactobacillus crispatus strain DC21.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 333892..345268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6A57_RS01725 (E6A57_01715) - 334511..334693 (+) 183 WP_005720404.1 hypothetical protein -
  E6A57_RS01730 (E6A57_01720) - 334705..335385 (+) 681 WP_005724199.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  E6A57_RS01735 (E6A57_01725) - 335496..336431 (+) 936 WP_023488529.1 AAA family ATPase -
  E6A57_RS01740 (E6A57_01730) pepC 336493..337842 (-) 1350 WP_068813523.1 aminopeptidase C -
  E6A57_RS01745 (E6A57_01735) - 337910..338209 (-) 300 WP_013085834.1 hypothetical protein -
  E6A57_RS01750 (E6A57_01740) - 338341..338892 (+) 552 WP_158181706.1 dUTP diphosphatase -
  E6A57_RS01755 (E6A57_01745) radA 338892..340268 (+) 1377 WP_158181707.1 DNA repair protein RadA Machinery gene
  E6A57_RS01760 (E6A57_01750) gltX 340346..341845 (+) 1500 WP_005720415.1 glutamate--tRNA ligase -
  E6A57_RS01765 (E6A57_01755) cysS 341945..343369 (+) 1425 WP_420889450.1 cysteine--tRNA ligase -
  E6A57_RS01770 (E6A57_01760) - 343362..343805 (+) 444 WP_013085836.1 mini-ribonuclease III -
  E6A57_RS01775 (E6A57_01765) rlmB 343792..344547 (+) 756 WP_005724210.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E6A57_RS01780 (E6A57_01770) - 344681..345226 (+) 546 WP_061204438.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50228.85 Da        Isoelectric Point: 7.1404

>NTDB_id=357715 E6A57_RS01755 WP_158181707.1 338892..340268(+) (radA) [Lactobacillus crispatus strain DC21.1]
MARVKTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGLNEPVKLDKIKAEKEDRIVTKSE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSDLSEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDI
REQINDVKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITIFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHTYRILHSVKNRFGAANEIGMFEMVNEGLREVTNPSSIFLDQRLPNSTGSAVVVSLEGTRPLLAEIQALVTPTA
FGYAKRTTSGISFNKASLLLAVLEKRGNLMLQNQDVYLTATGGIKLNEPAIDLAIAMAVASSYTDKEISPTDCFVGEVGL
TGEVRRVDKIDARVKEAAKVGFKRIFIPRHNMYSGLKDHGIEVIPVSSIPQALKLVFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=357715 E6A57_RS01755 WP_158181707.1 338892..340268(+) (radA) [Lactobacillus crispatus strain DC21.1]
ATGGCAAGAGTAAAAACACAATATAAGTGTCGTTCTTGCGGCTATATTTCTGCAAGTTATTTAGGCCGCTGTCCTAATTG
TGGTGCCTGGAATCAATTTGAAAAAGAAACAGAAGAAGTACAAAAGAGATCAACTAAAGCAACTGCCAGTCGTTTGATTC
AAAAGACCGGATTAAACGAACCAGTAAAGTTGGATAAGATCAAAGCCGAAAAAGAAGACAGAATTGTTACTAAGTCTGAA
GAATTAAACCGTGTTTTAGGTGGTGGCATTGTGCCAGGTTCACTAGTTTTAATTGGTGGAGATCCCGGAATCGGCAAGTC
AACCTTGATGTTGCAGATTATGAGCGATTTGTCAGAAAAATATAAGGTGCTTTATGTTTCTGGGGAAGAGTCAGCTAACC
AAATCAAATTGCGGGCTGACCGACTGGGTGTAGGTCAAAGTAATATGCTCTTATATCCAGAGACTGATATGCATGATATT
CGTGAACAAATCAATGATGTTAAGCCAGATTTTGTTGTGATTGACTCGATTCAAACGATGAATGAGCCTAGCCTTGATTC
AATGACCGGATCGGCTTCTCAAGTGCGTGAGGTAACCAGTGAATTAATGAAAATCGCCAAGATGGATGCCATCACTATTT
TTGTTATTGGTCACGTAACTAAGGAAGGTGCAATTGCTGGACCAAAGATTTTAGAGCATATGGTAGATACGGTGCTTTAT
TTTGAAGGGGATGAACACCACACCTACCGGATTTTGCATTCGGTTAAAAATCGTTTTGGAGCTGCTAATGAAATCGGCAT
GTTTGAAATGGTTAATGAAGGCTTAAGAGAGGTAACTAATCCATCATCAATTTTTCTGGACCAAAGATTACCTAATTCTA
CTGGCTCTGCTGTGGTGGTATCGCTTGAAGGAACTAGGCCACTTTTAGCAGAAATTCAGGCTTTGGTTACTCCGACAGCT
TTTGGCTATGCTAAAAGGACCACGTCAGGTATTAGTTTTAACAAAGCTTCATTGCTGCTAGCGGTGCTTGAAAAGCGGGG
AAACTTAATGTTGCAGAATCAAGATGTCTATTTGACTGCAACTGGTGGGATTAAATTGAATGAACCAGCAATTGATTTAG
CAATTGCCATGGCAGTTGCATCCAGTTATACCGATAAAGAAATTTCGCCGACAGATTGTTTTGTAGGCGAAGTGGGCTTA
ACTGGTGAAGTTCGCCGAGTTGATAAAATCGATGCACGAGTAAAAGAAGCGGCTAAAGTAGGGTTTAAGCGGATCTTTAT
TCCACGGCATAATATGTATTCTGGATTAAAAGACCATGGCATTGAAGTAATTCCCGTTTCGAGTATTCCCCAAGCTTTAA
AATTAGTTTTTGGCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-223)

Subunit ChlI of Mg-chelatase (ChlI)

(363-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

57.987

99.782

0.579
  radA Streptococcus mitis NCTC 12261

57.987

99.782

0.579
  radA Streptococcus pneumoniae Rx1

57.987

99.782

0.579
  radA Streptococcus pneumoniae D39

57.987

99.782

0.579
  radA Streptococcus pneumoniae R6

57.987

99.782

0.579
  radA Streptococcus pneumoniae TIGR4

57.987

99.782

0.579
  radA Bacillus subtilis subsp. subtilis str. 168

56.209

100

0.563

Multiple sequence alignment