Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | E6A54_RS00040 | Genome accession | NZ_CP039261 |
| Coordinates | 9214..9732 (+) | Length | 172 a.a. |
| NCBI ID | WP_012845405.1 | Uniprot ID | D0R2Q3 |
| Organism | Lactobacillus johnsonii strain DC22.2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4214..14732
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E6A54_RS00025 (E6A54_00025) | gyrB | 4230..6197 (+) | 1968 | WP_087284639.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| E6A54_RS00030 (E6A54_00030) | gyrA | 6208..8697 (+) | 2490 | WP_158171995.1 | DNA gyrase subunit A | - |
| E6A54_RS00035 (E6A54_00035) | rpsF | 8884..9180 (+) | 297 | WP_004896331.1 | 30S ribosomal protein S6 | - |
| E6A54_RS00040 (E6A54_00040) | ssb | 9214..9732 (+) | 519 | WP_012845405.1 | single-stranded DNA-binding protein | Machinery gene |
| E6A54_RS00045 (E6A54_00045) | rpsR | 9757..9993 (+) | 237 | WP_003649728.1 | 30S ribosomal protein S18 | - |
| E6A54_RS00050 (E6A54_00050) | - | 10087..11004 (+) | 918 | WP_012845406.1 | magnesium transporter CorA family protein | - |
| E6A54_RS00055 (E6A54_00055) | - | 11112..13130 (+) | 2019 | WP_158171996.1 | DHH family phosphoesterase | - |
| E6A54_RS00060 (E6A54_00060) | rplI | 13142..13597 (+) | 456 | WP_003651632.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18570.30 Da Isoelectric Point: 4.7531
>NTDB_id=357692 E6A54_RS00040 WP_012845405.1 9214..9732(+) (ssb) [Lactobacillus johnsonii strain DC22.2]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQANGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQANGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=357692 E6A54_RS00040 WP_012845405.1 9214..9732(+) (ssb) [Lactobacillus johnsonii strain DC22.2]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAGGCTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAACAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAGGCTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAACAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.069 |
100 |
0.628 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.568 |
100 |
0.517 |