Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   E5678_RS15795 Genome accession   NZ_CP039252
Coordinates   3460088..3461737 (-) Length   549 a.a.
NCBI ID   WP_136179410.1    Uniprot ID   A0A4P7RCI8
Organism   Hydrogenophaga sp. PAMC20947     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3455088..3466737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5678_RS15770 (E5678_15765) - 3455414..3455902 (-) 489 WP_247596799.1 DUF1993 domain-containing protein -
  E5678_RS15775 (E5678_15770) - 3456125..3456754 (-) 630 WP_247596800.1 DUF3592 domain-containing protein -
  E5678_RS15780 (E5678_15775) - 3457182..3457823 (-) 642 WP_136179408.1 2-hydroxychromene-2-carboxylate isomerase -
  E5678_RS15785 (E5678_15780) - 3458077..3458517 (-) 441 WP_247596801.1 putative toxin-antitoxin system toxin component, PIN family -
  E5678_RS15790 (E5678_15785) - 3458514..3459866 (-) 1353 WP_136179409.1 THUMP domain-containing protein -
  E5678_RS15795 (E5678_15790) rpoN/rpoN1 3460088..3461737 (-) 1650 WP_136179410.1 RNA polymerase factor sigma-54 Machinery gene
  E5678_RS15800 (E5678_15795) lptB 3461876..3462625 (-) 750 WP_136180814.1 LPS export ABC transporter ATP-binding protein -
  E5678_RS15805 (E5678_15800) lptA 3462664..3463305 (-) 642 WP_247596802.1 lipopolysaccharide transport periplasmic protein LptA -
  E5678_RS15810 (E5678_15805) - 3463470..3464111 (-) 642 WP_136179411.1 thiol:disulfide interchange protein DsbA/DsbL -
  E5678_RS15815 (E5678_15810) - 3464184..3464867 (-) 684 WP_136179412.1 SPOR domain-containing protein -
  E5678_RS15820 (E5678_15815) argS 3464885..3466582 (-) 1698 WP_136179413.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 549 a.a.        Molecular weight: 59843.25 Da        Isoelectric Point: 4.6199

>NTDB_id=357638 E5678_RS15795 WP_136179410.1 3460088..3461737(-) (rpoN/rpoN1) [Hydrogenophaga sp. PAMC20947]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDENPFLDRADETADREDFGLDHSDVPVSAGEQIAEAAAA
PEGESVAPDSELPFSQGTSSTASEPSESAAGEAAERKADGDGALEENWDGDGSVEMAPDDGEWGGDAPARNSGSSGGDDE
TATAADLARAPVSLQDHLHEQARCLRLSETDQAALYFLIESLNDDGYLDDDWTELALAFWRLLHGREAASPSIAAIEVAE
EQLRMALGWLHNMEPIGVGARDLGECLRLQIEDLRNTPVAQAALVICRQPLELLAKRDVKRLCALCGLDDETVRAALGLI
IGLEPKPGRRFVDVERNVVVPDVLVTHAGRGFKVQLNPDVMPRLRVHDVYANALRQNRGGKGGGGEAGHAAMQQRLQEAR
WFIKNIQQRFDTILRVSSAIVERQRNFFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTYELKYFFGSSL
GTETGGNASSTAVRALLKQLIAAENASKPLSDNQLSELLKAQGIECARRTVAKYREALRIAPANLRKTL

Nucleotide


Download         Length: 1650 bp        

>NTDB_id=357638 E5678_RS15795 WP_136179410.1 3460088..3461737(-) (rpoN/rpoN1) [Hydrogenophaga sp. PAMC20947]
ATGAAGCAAGGTTTGTCGCTGCGCGTTTCGCAGCATCTCGCGCTCACGCCACAGCTGCAGCAGTCGATCCGCTTGCTGCA
GCTCTCTACCCTTGAAATGGCGCAGGAAGTCGAGCAGATGCTCGATGAAAACCCGTTTCTCGATCGTGCGGATGAAACCG
CTGACCGCGAAGATTTTGGGCTTGATCACAGCGATGTCCCGGTCAGCGCAGGAGAGCAAATTGCCGAAGCGGCGGCGGCT
CCCGAGGGCGAATCTGTTGCCCCCGATTCAGAGTTGCCCTTCAGCCAAGGCACATCGTCGACAGCCAGTGAGCCCAGTGA
GAGTGCGGCTGGGGAAGCCGCCGAGCGCAAGGCCGATGGAGACGGGGCGTTGGAAGAAAATTGGGACGGCGACGGCTCCG
TGGAAATGGCGCCCGACGACGGCGAGTGGGGCGGTGATGCGCCCGCGCGCAACAGTGGCTCTTCCGGGGGTGACGACGAA
ACGGCAACGGCGGCTGATCTGGCCCGAGCGCCGGTCAGCCTGCAAGATCACCTCCATGAGCAGGCCCGCTGTTTGCGCCT
GAGCGAAACCGATCAGGCCGCACTGTATTTCCTGATCGAGTCGCTCAACGACGATGGTTATCTCGATGACGACTGGACAG
AATTGGCGTTGGCCTTTTGGCGGCTGCTGCACGGGCGCGAAGCTGCATCGCCCAGTATTGCGGCGATTGAAGTCGCGGAA
GAGCAGCTGCGCATGGCGCTGGGCTGGCTGCACAACATGGAGCCCATCGGCGTGGGTGCGCGGGATCTCGGCGAGTGTTT
GCGTCTGCAGATCGAAGACTTGCGCAACACGCCGGTTGCCCAGGCTGCGCTGGTGATTTGCCGACAACCGCTGGAGTTGC
TCGCCAAGCGCGATGTGAAGCGCTTGTGTGCGTTGTGTGGGCTGGACGATGAGACGGTGCGCGCAGCGCTTGGCCTGATC
ATCGGGCTGGAGCCCAAGCCGGGACGGCGGTTTGTGGATGTGGAGCGCAATGTCGTTGTGCCCGATGTCCTGGTCACGCA
CGCCGGGCGTGGCTTCAAGGTGCAGCTCAACCCCGACGTCATGCCGCGGTTGAGGGTGCACGATGTATACGCCAACGCCC
TGCGTCAGAACCGGGGTGGGAAAGGGGGTGGCGGCGAAGCAGGCCATGCCGCCATGCAGCAGCGTTTGCAGGAGGCGCGC
TGGTTCATCAAGAATATCCAGCAGCGGTTCGACACCATCCTGCGCGTGTCCTCGGCCATTGTCGAACGGCAGCGCAATTT
TTTCATGCATGGCGAGCTCGCCATGCGGCCGCTGGTGTTGCGCGAAATCGCCGACGAGCTGGGCTTGCACGAGTCCACCA
TCAGCCGTGTGACCACCGCCAAGTACATGGCCACGCCGTTCGGCACCTACGAACTCAAGTACTTTTTTGGCTCATCGCTG
GGCACGGAGACTGGCGGCAACGCATCGAGCACAGCGGTGCGCGCCTTGCTCAAACAGCTCATTGCCGCTGAAAACGCGTC
AAAACCATTGTCAGACAACCAGCTTTCCGAACTGCTCAAAGCGCAGGGTATTGAGTGTGCCCGCCGTACTGTGGCCAAAT
ACCGGGAAGCGTTGCGCATCGCGCCCGCCAATTTGCGAAAAACCTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(167-370)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(391-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7RCI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.546

100

0.497

Multiple sequence alignment