Detailed information NTG0357631

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: E5678_RS11305
• Genome accession: NZ_CP039252
• Coordinates: 2515621..2516676 (+)
• Length: 351 a.a.
• NCBI ID: WP_247597024.1
• Uniprot ID: -
• Organism: Hydrogenophaga sp. PAMC20947
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2510621..2521676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5678_RS11280 (E5678_11280)	-	2510654..2510953 (-)	300	WP_136178617.1	YfhL family 4Fe-4S dicluster ferredoxin	-
E5678_RS11285 (E5678_11285)	coaD	2510970..2511485 (-)	516	WP_136178618.1	pantetheine-phosphate adenylyltransferase	-
E5678_RS11290 (E5678_11290)	rsmD	2511520..2512137 (-)	618	WP_136178619.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
E5678_RS11295 (E5678_11295)	-	2512190..2513557 (-)	1368	WP_136178620.1	pitrilysin family protein	-
E5678_RS11300 (E5678_11300)	-	2513574..2514941 (-)	1368	WP_247597023.1	pitrilysin family protein	-
E5678_RS11305 (E5678_11305)	pilA	2515621..2516676 (+)	1056	WP_247597024.1	signal recognition particle-docking protein FtsY	Machinery gene
E5678_RS11310 (E5678_11310)	-	2516728..2516916 (-)	189	WP_247596748.1	zf-HC2 domain-containing protein	-
E5678_RS11315 (E5678_11315)	-	2516943..2517509 (-)	567	WP_136178623.1	sigma-70 family RNA polymerase sigma factor	-
E5678_RS11320 (E5678_11320)	-	2517589..2518155 (+)	567	WP_136178624.1	TlpA disulfide reductase family protein	-
E5678_RS11325 (E5678_11325)	-	2518320..2518646 (+)	327	WP_136178625.1	DUF2282 domain-containing protein	-
E5678_RS11330 (E5678_11330)	-	2518653..2519573 (+)	921	WP_136178626.1	DUF692 domain-containing protein	-
E5678_RS11335 (E5678_11335)	-	2519570..2520421 (+)	852	WP_136178627.1	DNA-binding domain-containing protein	-
E5678_RS11340 (E5678_11340)	-	2520418..2520894 (+)	477	WP_136178628.1	DoxX family protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 36680.54 Da
• Isoelectric Point: 8.8485

>NTDB_id=357631 E5678_RS11305 WP_247597024.1 2515621..2516676(+) (pilA) [Hydrogenophaga sp. PAMC20947]
MAPVSMPAAVKAPPPMKTASVPAPTLSEPAKVTSVTSVVPLAPPTSADATPPARKGWLDRLKAGLRKTGASIAGVFTGTQ
INDALYEELEDALLMADTGVKATEHLLIDLKKRVKDAKATDPAAVKGLLAESITALLKPLEKALVIGEHKPTVIMVAGVN
GAGKTTSIGKLTRHLANGGASVLLAAADTFRAAAREQLAVWADRNTVEIVTQEGGDPAAVSFDAVTAGRARGRDVVLVDT
AGRLPTQLHLMEELRKIKRVVQKADPTGPHEILLVIDGNTGQNALAQVKAFDETLGLTGLVITKLDGTAKGGVICAIARE
RPIPIYFIGVGEKLEDLETFSAREFAQALLT

Nucleotide

• Length: 1056 bp

>NTDB_id=357631 E5678_RS11305 WP_247597024.1 2515621..2516676(+) (pilA) [Hydrogenophaga sp. PAMC20947]
GTGGCGCCTGTTTCAATGCCTGCGGCTGTGAAAGCTCCCCCGCCCATGAAGACGGCGTCCGTTCCCGCACCCACACTTAG
CGAGCCGGCCAAGGTCACCTCAGTCACATCCGTCGTCCCGCTCGCCCCGCCCACTTCAGCAGACGCAACGCCCCCGGCTC
GCAAAGGCTGGCTGGACCGCCTCAAGGCGGGTCTGCGCAAGACCGGCGCGAGCATCGCCGGCGTTTTCACCGGAACGCAG
ATCAACGATGCGCTGTACGAAGAGCTGGAAGACGCCCTTTTGATGGCCGATACTGGCGTAAAAGCGACCGAACACCTGCT
GATCGACCTCAAGAAGCGGGTCAAAGATGCCAAGGCAACAGACCCGGCTGCGGTGAAGGGATTGCTGGCCGAATCCATTA
CGGCCCTGCTCAAACCGCTGGAAAAAGCGCTGGTTATCGGCGAACACAAACCCACGGTGATCATGGTGGCGGGCGTCAAC
GGCGCCGGCAAGACCACGTCGATCGGCAAACTCACACGCCACCTGGCCAACGGAGGCGCGTCGGTGCTGCTGGCGGCTGC
GGACACCTTCCGGGCTGCGGCCCGCGAGCAACTGGCCGTCTGGGCCGACCGCAACACGGTCGAAATCGTGACCCAGGAGG
GCGGTGACCCGGCAGCGGTGAGCTTTGATGCCGTCACGGCTGGGCGAGCGCGTGGACGCGACGTGGTGCTGGTCGACACC
GCGGGGCGCCTGCCGACCCAATTGCACCTGATGGAAGAGCTGCGCAAGATCAAACGGGTCGTGCAGAAAGCCGATCCCAC
CGGGCCCCATGAAATCTTGCTGGTGATCGATGGCAACACAGGGCAAAACGCCTTGGCGCAGGTCAAAGCCTTCGACGAAA
CCCTGGGCCTCACCGGTCTGGTGATCACAAAACTCGATGGCACGGCCAAGGGCGGTGTGATTTGCGCGATTGCGCGCGAA
CGGCCGATTCCGATCTACTTCATCGGGGTGGGCGAAAAGCTGGAAGATCTGGAAACCTTCAGCGCCAGGGAATTTGCACA
GGCTTTGCTGACCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (71-132)

• SRP54-type protein, GTPase domain (SRP54) (151-350)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	58.497	87.179	0.51