Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GR129_RS18905 Genome accession   NZ_CP047144
Coordinates   4250255..4250854 (+) Length   199 a.a.
NCBI ID   WP_145487065.1    Uniprot ID   -
Organism   Streptomyces sp. HF10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4245255..4255854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR129_RS18890 (GR129_18890) - 4246231..4248102 (+) 1872 WP_159703499.1 serine/threonine-protein kinase -
  GR129_RS18895 (GR129_18895) - 4248876..4249622 (-) 747 WP_145487063.1 SLATT domain-containing protein -
  GR129_RS18900 (GR129_18900) - 4249859..4250203 (+) 345 WP_145487064.1 YbaB/EbfC family nucleoid-associated protein -
  GR129_RS18905 (GR129_18905) recR 4250255..4250854 (+) 600 WP_145487065.1 recombination mediator RecR Machinery gene
  GR129_RS18910 (GR129_18910) - 4250847..4251509 (+) 663 WP_145487066.1 DUF5063 domain-containing protein -
  GR129_RS18915 (GR129_18915) - 4251722..4252993 (+) 1272 WP_145487067.1 aspartate kinase -
  GR129_RS18920 (GR129_18920) - 4252990..4254045 (+) 1056 WP_159703502.1 aspartate-semialdehyde dehydrogenase -
  GR129_RS18925 (GR129_18925) - 4254449..4255036 (+) 588 WP_145487069.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21760.13 Da        Isoelectric Point: 4.9909

>NTDB_id=357607 GR129_RS18905 WP_145487065.1 4250255..4250854(+) (recR) [Streptomyces sp. HF10]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVKRLAQALLEVKAKVRFCAACGNVAQEELCNICRDPRRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=357607 GR129_RS18905 WP_145487065.1 4250255..4250854(+) (recR) [Streptomyces sp. HF10]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCGACGGACGTGAAACGGCTCGCGCAGGCGCTCCTGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGGCCTGCGGCAATGTCGCGCAGGAGGAACTGTGCAACATCTGCCGTGACCCGCGCCGCGATCCCTCGGTG
ATCTGCGTCGTGGAGGAGCCGAAGGACGTCGTGGCGATCGAGCGCACCCGCGAGTTCCGCGGCCGCTACCACGTGCTCGG
CGGGGCGATCAGCCCCATCGAGGGTGTCGGGCCCGACGACCTGCGTATACGGGAACTTCTCACGCGGTTGGCCGACGGGA
CGGTCACGGAGCTGATCCTGGCCACCGATCCGAATCTCGAGGGCGAGGCGACGGCCACGTACCTCGCGCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGAAGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467